View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_14 (Length: 421)

Name: NF10129_low_14
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_14
NF10129_low_14
[»] chr8 (6 HSPs)
chr8 (247-417)||(473240-473410)
chr8 (39-146)||(473452-473559)
chr8 (35-100)||(1838407-1838472)
chr8 (35-100)||(30587328-30587393)
chr8 (35-92)||(31671648-31671705)
chr8 (34-74)||(40473858-40473898)
[»] chr7 (4 HSPs)
chr7 (218-417)||(41521186-41521371)
chr7 (35-146)||(41521003-41521114)
chr7 (33-93)||(7964510-7964570)
chr7 (35-89)||(1824588-1824642)
[»] chr5 (3 HSPs)
chr5 (221-383)||(1242712-1242869)
chr5 (33-146)||(1242951-1243063)
chr5 (35-90)||(6689898-6689953)
[»] chr4 (1 HSPs)
chr4 (35-100)||(3607931-3607996)
[»] chr1 (4 HSPs)
chr1 (46-146)||(22206441-22206541)
chr1 (35-99)||(23920804-23920870)
chr1 (35-69)||(4798689-4798723)
chr1 (35-89)||(13842998-13843052)
[»] chr6 (2 HSPs)
chr6 (35-89)||(6632744-6632798)
chr6 (35-88)||(32868836-32868889)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 473410 - 473240
Alignment:
Q  247 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473410 ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac 473311  T
Q  347 ccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatattcttctctgctcctc 417  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||    
T  473310 ccttgaactattttactaattcccaacaactctcatctaaattgtttcatttatattcttttctgttcctc 473240  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 473559 - 473452
Alignment:
Q  39 atagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaat 138  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  473559 atagataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatcttttaagaacaaccttccttcatactctttctaaattatttcttaat 473460  T
Q  139 aaggaaac 146  Q
    ||||||||    
T  473459 aaggaaac 473452  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 1838472 - 1838407
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||    
T  1838472 atctatagataataataaagcaaacttagtattttggcaagtttgccatttgtcatcttctaagaa 1838407  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 30587393 - 30587328
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||| ||||||    
T  30587393 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaa 30587328  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 31671705 - 31671648
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatct 92  Q
    |||||||||||||||||||||||||||| | ||| ||||||| || ||||| ||||||    
T  31671705 atctatagataataataaagcaagcttaatttttgggcaaatatgacatttatcatct 31671648  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 40473898 - 40473858
Alignment:
Q  34 tatctatagataataataaagcaagcttagtattttggcaa 74  Q
    ||||||||||| ||||||||||||| ||||| |||||||||    
T  40473898 tatctatagattataataaagcaaggttagttttttggcaa 40473858  T

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Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 218 - 417
Target Start/End: Original strand, 41521186 - 41521371
Alignment:
Q  218 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41521186 cgatatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaata------ 41521279  T
Q  318 gactgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatcgaaattgtttcatttatattcttctctgctcctc 417  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||    
T  41521280 --------cttcagcttttgttcttctacccttgaactattttactacttcccaacaagtctcatctaaattgtttcatttatattcttttctgttcctc 41521371  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 41521003 - 41521114
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttct 134  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||| || ||||||||||  |||||||||||||||||||||||||    
T  41521003 atctatagataataataaaggaagtttagtattttggcaagtttgccatttgtcatcttctaggaacaaccttccttgatactctttctaaattatttct 41521102  T
Q  135 taataaggaaac 146  Q
    ||||||||||||    
T  41521103 taataaggaaac 41521114  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 7964570 - 7964510
Alignment:
Q  33 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatctt 93  Q
    |||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||    
T  7964570 ttatttatagataataataaagcaagcttagtattatggcaagtatgacatttgtcatctt 7964510  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 1824642 - 1824588
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 89  Q
    ||||||||||||||||||||||| || ||||||||| ||| | || |||||||||    
T  1824642 atctatagataataataaagcaaactaagtattttgacaagtatgccatttgtca 1824588  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 221 - 383
Target Start/End: Complemental strand, 1242869 - 1242712
Alignment:
Q  221 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattca-tcttttgatttcaccattttctaaaaatacttttcga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  1242869 tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatttttttaatttcaccattttctaaaaatacttttcga 1242770  T
Q  320 ctgccgcttcagcttttgttcttctacccttgaactattttactacttcccaacaactctcatc 383  Q
    |  |||||||||||||||||||||||||      | |||||||||||||||||||| |||||||    
T  1242769 ccaccgcttcagcttttgttcttctacc------ccattttactacttcccaacaagtctcatc 1242712  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 1243063 - 1242951
Alignment:
Q  33 ttatctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattattt 132  Q
    ||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||| |||||||| || |||||||||||| ||||| ||||    
T  1243063 ttatctatagataataataaagcaaacttaatattttggtaagtttgtcatttgtcatcttttaggaacaacc-ttcttgatactctttgtaaataattt 1242965  T
Q  133 cttaataaggaaac 146  Q
    ||| ||||||||||    
T  1242964 ctttataaggaaac 1242951  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 6689953 - 6689898
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcat 90  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  6689953 atctacagataataataaagcaaacttagtattttggcaagtttgtcatctgtcat 6689898  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 3607996 - 3607931
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaa 100  Q
    ||||||||||||||||||| ||| || | ||||||||||| |||||||||||||||||||||||||    
T  3607996 atctatagataataataaaacaaactcattattttggcaagtttgtcatttgtcatcttttaagaa 3607931  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 22206541 - 22206441
Alignment:
Q  46 ataataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaagaacaaccttttttgatactctttctaaattatttcttaataaggaaa 145  Q
    ||||||||||||  |||||  |||||||| || | ||||||||||||| ||||| || ||||  |||| ||||||||||||||||| |||||||||||||    
T  22206541 ataataaagcaaagttagttctttggcaagttagacatttgtcatcttctaagagcatccttccttgacactctttctaaattattgcttaataaggaaa 22206442  T
Q  146 c 146  Q
    |    
T  22206441 c 22206441  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 23920870 - 23920804
Alignment:
Q  35 atctatagataata--ataaagcaagcttagtattttggcaaatttgtcatttgtcatcttttaaga 99  Q
    ||||||||||||||  ||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  23920870 atctatagataatataataaagcaaacttagtattttggcaagtttgccatttgtcatcttttaaga 23920804  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 4798689 - 4798723
Alignment:
Q  35 atctatagataataataaagcaagcttagtatttt 69  Q
    ||||||||||||||||||| |||||||||||||||    
T  4798689 atctatagataataataaaacaagcttagtatttt 4798723  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 13842998 - 13843052
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 89  Q
    |||||||||||||||||||||||  ||||| ||||||||| | || |||||||||    
T  13842998 atctatagataataataaagcaatgttagttttttggcaagtatgacatttgtca 13843052  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 6632744 - 6632798
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtca 89  Q
    |||||||||||||||||||||||||| ||||||||| |||   ||||||||||||    
T  6632744 atctatagataataataaagcaagctcagtattttgacaagcctgtcatttgtca 6632798  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 32868889 - 32868836
Alignment:
Q  35 atctatagataataataaagcaagcttagtattttggcaaatttgtcatttgtc 88  Q
    ||||||||||||||||||||||||||||||||| | |||| | || ||||||||    
T  32868889 atctatagataataataaagcaagcttagtattatagcaagtatgacatttgtc 32868836  T

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