View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_16 (Length: 415)
Name: NF10129_low_16
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 50640386 - 50640771
Alignment:
| Q |
19 |
ctttctaccttatagcatctgaatattttactagtgggagacagagagtttaaaggaagataacaatcaatgtgcttaaagtttgcctcttccattttaa |
118 |
Q |
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| T |
50640386 |
ctttctaccttatagcatctgaatattttactagtgggagacaaagagtttaaaggaagataacaatcaatgtgcttaaagtttgcctcttccattttaa |
50640485 |
T |
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| Q |
119 |
atcaaactaggtatcttgttcctgttgatacctgaatacaatttctttcacctatgatcaagatcaaagaatctataagcactcaccctcattctatatt |
218 |
Q |
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| T |
50640486 |
atcaaactaggtatcttgttcctgttgatacctgaatacaatttctttcacctatgatcaagatcaaagaatctataagcactcaccctcattctatatt |
50640585 |
T |
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| Q |
219 |
ccagagaatcaggaaaaggggcctgtaatagaattgaaataatgttatagggtttaaagaaaaaggtctctgattgcgatttgaactgcaacatcaactt |
318 |
Q |
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| T |
50640586 |
ccagagaatcaggaaaaggggcctgtaatagaattgaaataatgttatagggtttaataaaaaaggtctctgatcgcgatttgaactgcaacatcaactt |
50640685 |
T |
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| Q |
319 |
ttttaatatctctacgaccaccacgcaactgcaatcatcaaggattgtgatgcaactggtatacctcaatttaaaccatcacctat |
404 |
Q |
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| T |
50640686 |
ttttaatatctctacgaccaccacgcaactgcaatcatcaaggattgtgatgcaactggtatacctcaatttaaaccatcacctat |
50640771 |
T |
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