View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_17 (Length: 415)
Name: NF10129_low_17
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_17 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 44949824 - 44950190
Alignment:
| Q |
17 |
agagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataataca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949824 |
agagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataataca |
44949923 |
T |
|
| Q |
117 |
tactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaaaatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
44949924 |
tactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacactatccatctaaaattttgaacatggaaaaaatg |
44950023 |
T |
|
| Q |
217 |
aaataggcactatgacaagtcattatgacaatgtagacaaaatgatcattattttaagacatcaatgactgactatgacaactccaaacacgtaatgatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
44950024 |
aaataggcactatgacaagtcattatgacaatgtagacaaaatgatcattattttaagacatcaatgaccgaatatgacaactccaaacacgtaatgatc |
44950123 |
T |
|
| Q |
317 |
attattttaagcgataaagtgactataaacctttgagtccatcttcgttgataatgcagatggattc |
383 |
Q |
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| T |
44950124 |
attattttaagcgataaagtgactataaacctttgagtccatcttcgttgataatgcagatggattc |
44950190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 44943912 - 44944199
Alignment:
| Q |
17 |
agagaaaaatgtcaagcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttaca-gtttacactttcaagtaaataatac |
115 |
Q |
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|||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
44943912 |
agagaaaaatgtcaagcaacgt--aattaactaactcattcaaatggttaattgaagatgaaggatactttacaagtttacactttcaagtaaataatac |
44944009 |
T |
|
| Q |
116 |
atactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaaaat |
215 |
Q |
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||||| ||||||||||||||||||||||| ||||| | |||||| ||||||| | || || || || |||||||||||| || ||||||| |
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| T |
44944010 |
----tttcctgaagatgaaattataaattaaaatgttaaatggatcatactagagaa-cattaaatcctatccatctaaaattttgatcactgaaaaaac |
44944104 |
T |
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| Q |
216 |
gaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatcattattttaagacatc--aatgactgactatgacaactccaaacac |
307 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
44944105 |
aaaataggcacgatgacaagtcaatatgcacaatgtagacaaaatgatcattattttaaggcatccatatgactgtctatgacaactccaaacac |
44944199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 6470668 - 6470960
Alignment:
| Q |
17 |
agagaaaaatgtcaa-gcagggtgtaattaactaactcgttcaaatggttaattgaaaatgaaaagtactttacagtttacactttcaagtaaataatac |
115 |
Q |
| |
|
||||||||||||||| |||| || ||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6470668 |
agagaaaaatgtcaaagcagagtataattaattatatcattcaaatggttaattgaaaattggaagtactttacagtttacactttcaagtaaataatac |
6470767 |
T |
|
| Q |
116 |
atactttcccgaagatgaaattataaattaaaacgttaagtcaatc-ataatagagaacctttgaacccaatttggctaaaatttt-gaacatggaaaaa |
213 |
Q |
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||||| ||| ||||| ||||||||||||| | | ||| |||| |||||| |||| |||| ||||| || | || ||||||| ||||||||||||| |
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| T |
6470768 |
---ttttcctgaaaatgaagttataaattaaaatggtgagtgaatcaataataaagaatctttcaaccctatccgtctcaaattttggaacatggaaaaa |
6470864 |
T |
|
| Q |
214 |
atgaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatc-attattttaagacatcaatgactgactatgacaactccaaacac |
307 |
Q |
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| |||||||||||||||||||||| |||| | ||||| ||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
6470865 |
acaaaataggcactatgacaagtcaatatgcattatgtacacaaaatgatcaattattttaacacatctatgattgactatgacaactccaaacac |
6470960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 44950215 - 44950243
Alignment:
| Q |
387 |
atacttaccaatctgttgatctaggtcac |
415 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
44950215 |
atacttaccaatctgttgatctaggtcac |
44950243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 307
Target Start/End: Complemental strand, 418989 - 418764
Alignment:
| Q |
84 |
ctttacagtttacactttcaagtaaataatacatactttcccgaagatgaaattataaattaaaacgttaagtc-----aatcataatagagaacctttg |
178 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||| ||| |||||||||| |||| |||| |
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| T |
418989 |
ctttacagtttacactttcaagtaaataatat----tttcctgaaaatgaaattataaattaaaatgttgagttgagtgaatcataataaagaatcttta |
418894 |
T |
|
| Q |
179 |
aacccaatttggctaaaattttg-aacatggaaaaaatgaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatc-attattttaaga |
275 |
Q |
| |
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||||| | | ||||||||||| ||||||||||||||||||||||||| ||||||||||| || | | |||||||| |||| || |||||||||||| |
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| T |
418893 |
aaccctactcatctaaaattttggaacatggaaaaaatgaaataggcaccatgacaagtcaataagcattatgtagac--aatgttcaattattttaaga |
418796 |
T |
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| Q |
276 |
catcaatgactgactatgacaactccaaacac |
307 |
Q |
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|||| |||| |||||||||||||||||||||| |
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| T |
418795 |
catctatgattgactatgacaactccaaacac |
418764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 16464269 - 16464301
Alignment:
| Q |
381 |
ttcctcatacttaccaatctgttgatctaggtc |
413 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16464269 |
ttcctcatacttaccaatctgttgatctaggtc |
16464301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 16471291 - 16471323
Alignment:
| Q |
381 |
ttcctcatacttaccaatctgttgatctaggtc |
413 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
16471291 |
ttcctcatacttaccaatctgttgatctaggtc |
16471323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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