View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_low_18 (Length: 411)
Name: NF10129_low_18
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 118 - 393
Target Start/End: Complemental strand, 27755978 - 27755704
Alignment:
| Q |
118 |
aagtgataaataatatagtatactgaagtgcactatagcggacgacgagaaacccctatgtcaaaaccaaatacacagaa--tgaatgcataggttaaaa |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27755978 |
aagtgataagtaatatagtatactgaagtgcactatagtggacgacgagaaacccctatgtcaaaaccaaatacacagaaattgaatgcataggttaaaa |
27755879 |
T |
|
| Q |
216 |
gaggcctcaaatcccttcacaagtcggataaattaagcttgctaaagagtgaactggagtccatagagaaaatgctcccccagataacctgctttaataa |
315 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
|
|
| T |
27755878 |
gaggcctcgaatcccttca-------gataaattaaccttgctaaagagtgaactggagtccatagagacaatgctcccccaaataacctgctttaatga |
27755786 |
T |
|
| Q |
316 |
ggaggagggaattt----taannnnnnnnnnaagcaggggagagagagggaaatgtttgtatagactctggcattataatat |
393 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27755785 |
ggaggagggaattttttatttttttttgaagaagcaggggagagagagggaaatgtttgtatagactctggcattataatat |
27755704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 27756035 - 27756001
Alignment:
| Q |
4 |
aacttcatataatcaacaaatagaagtaatttaca |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
27756035 |
aacttcatataatcaacaaatagaagtaatttaca |
27756001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University