View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_low_19 (Length: 399)
Name: NF10129_low_19
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 741705 - 742071
Alignment:
| Q |
17 |
aataacatgccctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttcctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
741705 |
aataacatgccctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttcctt |
741804 |
T |
|
| Q |
117 |
gta--agcatagacagcactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaacaatnnnnnnnttagttat |
214 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
741805 |
gtataagcatagacagcactgtcaccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaacaataaaaaaattagttat |
741904 |
T |
|
| Q |
215 |
aagttacannnnnnnctataagaaaaagattaaaataatgatgatgatgctataataataacacttacaggatcatagctctcagcaagtatataatcca |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
741905 |
aagttacatttttttctataagaaaaagattaaaataatgatgatgatgctataataataacacttacaggatcatagctctcagcaagtatataatcca |
742004 |
T |
|
| Q |
315 |
ctgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatccttgat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742005 |
ctgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatccttgat |
742071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 42448850 - 42449201
Alignment:
| Q |
17 |
aataacatgccctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttcctt |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42448850 |
aataacatgccctccattattttcaacacggtataccaaataactgtcatttggaccaacatcgatgtaaaccgttgtattctcaccaattactttcctt |
42448949 |
T |
|
| Q |
117 |
gtaagca---tagacagcactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaacaatnnnnnnnttagtta |
213 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
42448950 |
gtaagcatcctagacaacactgtcaccacctttttctcaagccagcttctaattggtctagcaccatacacctacaaaacaataa--aaaaaactagtta |
42449047 |
T |
|
| Q |
214 |
taagttaca-nnnnnnnctataagaaaaagattaaaataatgatgatgatgctataataataacacttacaggatcatagctctcagcaagtatataatc |
312 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449048 |
taagtaacattttttttctataagaaaaagattaaa------------atgatataatagtaacacttacaggatcatagctctcagcaagtatataatc |
42449135 |
T |
|
| Q |
313 |
cactgctccatctgtaacttccaccaatgtagttcctttcctacaaaaacgattagctacatccttgat |
381 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||| ||| || ||||||| ||||||||||||| |
|
|
| T |
42449136 |
cactgctccatctgtaact---gccaacgaagttcctttcttaccaagacgattacctacatccttgat |
42449201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 739589 - 739756
Alignment:
| Q |
34 |
tattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttccttgtaagcat---agacag |
130 |
Q |
| |
|
|||||||| |||||| ||||||| ||| |||| ||| || |||| |||||||| |||||||| ||||||||| ||| |||| ||||||| |||||| |
|
|
| T |
739589 |
tattttctgcacggtgtaccaaaccacttccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacag |
739688 |
T |
|
| Q |
131 |
cactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaacaa |
198 |
Q |
| |
|
| ||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
739689 |
ctctgtcactaccttcttctcaagccaccttctaattgatctagcaccatacacctacaatacaacaa |
739756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 10047234 - 10047065
Alignment:
| Q |
26 |
ccctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttccttgtaag---c |
122 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||| | || |||||| |||||||| |||| |||||||||||||||||| ||| |||| |||| | |
|
|
| T |
10047234 |
ccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctcatcaatttcttcccttataagcatc |
10047135 |
T |
|
| Q |
123 |
atagacagcactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaa |
195 |
Q |
| |
|
||||| ||| ||||| |||| || |||||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
10047134 |
atagatagctctgtcaccacattcttctcaagccac---caaattggtctagcaccgtacacctacacaacaa |
10047065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 38709195 - 38709028
Alignment:
| Q |
28 |
ctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttccttgta---agcat |
124 |
Q |
| |
|
||||||| ||||| ||||||||| ||| | ||| | || ||||||||||||||||| || ||||| |||||||||||| || | || || | ||| |
|
|
| T |
38709195 |
ctccattcttttccacacggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcat |
38709096 |
T |
|
| Q |
125 |
agacagcactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaa |
192 |
Q |
| |
|
|| |||| | || |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709095 |
agccagctcactcaccacattcttctcaagccaccttctaattggtctagcaccatacacctacacaa |
38709028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 38708617 - 38708576
Alignment:
| Q |
271 |
aataacacttacaggatcatagctctcagcaagtatataatc |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38708617 |
aataacacttacaggatcatagctttcagcaagtatataatc |
38708576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 10047002 - 10046966
Alignment:
| Q |
276 |
cacttacaggatcatagctctcagcaagtatataatc |
312 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
10047002 |
cacttacgggatcatagctttcagcaagtatataatc |
10046966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 45468926 - 45468757
Alignment:
| Q |
26 |
ccctccattattttctacacggtataccaaataactgtcatttggaccaacatcaatgtaaaccgttgtattctcatcaattactttccttgtaagca-- |
123 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| || | || |||||| |||| ||||||||||||||||||||||||||| ||| ||| | |||| |
|
|
| T |
45468926 |
ccctccattcttttctacacggtatgccaaatcgcttcccttaggaccagcatctatgtaaaccgttgtattctcatcaatttcttctcttatgagcatc |
45468827 |
T |
|
| Q |
124 |
-tagacagcactgtcgccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaa |
192 |
Q |
| |
|
|||| || ||||| ||||||| ||||| ||||| ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
45468826 |
ctagagagttctgtcaccaccttcttctctagccatcttctgattggtctagctccatacacctatacaa |
45468757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 45468663 - 45468627
Alignment:
| Q |
276 |
cacttacaggatcatagctctcagcaagtatataatc |
312 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
45468663 |
cacttactggatcatagctctcagcaagaatataatc |
45468627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University