View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_2 (Length: 626)
Name: NF10129_low_2
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_2 |
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| [»] scaffold0777 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 24930244 - 24929767
Alignment:
| Q |
8 |
aaaacagaacaatccttgaatgcacaataattcttttgctccaatgcaattttatactcagactttgccaattcccatcgatctataaattctttaggca |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||| |
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| T |
24930244 |
aaaacagaacaatccttgaatgcacaataagtcttttgctccaatgcaattttagactcatactttgccaattcccatagatctataaattatttaggca |
24930145 |
T |
|
| Q |
108 |
aaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatattt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24930144 |
aaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatctacatattt |
24930045 |
T |
|
| Q |
208 |
ggaaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgag |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930044 |
ggaaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgag |
24929945 |
T |
|
| Q |
308 |
gactcaccaattaacataccagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtgaattttc |
407 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
24929944 |
gactcaccaatt-acataccagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcatagctttctgaagtggattttc |
24929846 |
T |
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| Q |
408 |
tctttagttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24929845 |
tctttagttttttctgctttgtatcagaatcatgttctgacggttcttttatcactagcggcgccgagaataagcggtg |
24929767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 2 - 316
Target Start/End: Original strand, 24976627 - 24976941
Alignment:
| Q |
2 |
accaataaaacagaacaatccttgaatgcacaataattcttttgctccaatgcaattttatactcagactttgccaattcccatcgatctataaattctt |
101 |
Q |
| |
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||||| ||||||||||||| ||| |||| ||||||| ||||||| ||||||||||||||| ||||| || ||| | |||||||| ||| ||||||||| |
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| T |
24976627 |
accaacaaaacagaacaattcttaaatggacaataagtcttttggtccaatgcaattttagactcatacactgcaagttcccatctatcaataaattctc |
24976726 |
T |
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| Q |
102 |
taggcaaaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccac |
201 |
Q |
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||||||||||||||| ||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| |
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| T |
24976727 |
taggcaaaatatgtttcaaatgtctcggctcaaatttcacaaaacaatttggagttggacaagtcaccttaaccacattgttgttaatttgagaaaccac |
24976826 |
T |
|
| Q |
202 |
atatttggaaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagctt |
301 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
24976827 |
atatttggaaatacattcaacacaaaagaggtggttgcaactctttcttttgaacatatctgaatctgttttcaaatcaaagcatataccacataagctt |
24976926 |
T |
|
| Q |
302 |
cttgaggactcacca |
316 |
Q |
| |
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| |||||| |||||| |
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| T |
24976927 |
cgtgaggattcacca |
24976941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 21788125 - 21788190
Alignment:
| Q |
100 |
tttaggcaaaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagt |
165 |
Q |
| |
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|||||| ||||| |||||||| ||| ||||| |||||| |||||||||||||| |||||||||| |
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| T |
21788125 |
tttaggtaaaatgtgttgcaattgttttggcttcaatttcacagaacaatttggacttggacaagt |
21788190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 1688 - 2166
Alignment:
| Q |
8 |
aaaacagaacaatccttgaatgcacaataattcttttgctccaatgcaattttatactcagactttgccaattcccatcgatctataaattctttaggca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
1688 |
aaaacagaacaatccttgaatgcacaataagtcttttgctccaatgcaattttagactcatactttgccaactcccatcgatcgataaattctttaggca |
1787 |
T |
|
| Q |
108 |
aaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatattt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1788 |
aaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatattt |
1887 |
T |
|
| Q |
208 |
ggaaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgag |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1888 |
ggaaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatccaaatcagttttcaaatcaaagcatataccacatgagcttcttgag |
1987 |
T |
|
| Q |
308 |
gactcaccaattaacataccagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtgaattttc |
407 |
Q |
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|| |||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1988 |
gattcaccaattaacatcttagtggtgaattcttctggttcctcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtggattttc |
2087 |
T |
|
| Q |
408 |
tctttagttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
486 |
Q |
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|||||||||| |||||||||| |||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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| T |
2088 |
tctttagtttcttctgctttgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtg |
2166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 486
Target Start/End: Original strand, 2256 - 2328
Alignment:
| Q |
414 |
gttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
486 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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| T |
2256 |
gtttcttctcctttgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtg |
2328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 2418 - 2482
Alignment:
| Q |
414 |
gttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaat |
478 |
Q |
| |
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|||| |||| ||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||| |
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| T |
2418 |
gtttcttctcctttgcatcagaatcatgttctgactgttcttttatcactaacggcgccgagaat |
2482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 550 - 601
Target Start/End: Original strand, 2560 - 2611
Alignment:
| Q |
550 |
aagtggttttctcttcatcatgtttggtttcttctcctttgcctgagaatct |
601 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
2560 |
aagtgattttctcttcatcatgtttggtttcttctcctttgcattagaatct |
2611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 605
Target Start/End: Original strand, 2380 - 2447
Alignment:
| Q |
538 |
ataggcatctcgaagtggttttctcttcatcatgtttggtttcttctcctttgcctgagaatcttgtt |
605 |
Q |
| |
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|||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||| | |||||| |||| |
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| T |
2380 |
atagccatctggaagtgattttctcttcaccatgtgtggtttcttctcctttgcatcagaatcatgtt |
2447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 591
Target Start/End: Original strand, 2218 - 2271
Alignment:
| Q |
538 |
ataggcatctcgaagtggttttctcttcatcatgtttggtttcttctcctttgc |
591 |
Q |
| |
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|||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||| |
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|
| T |
2218 |
atagccatctggaagtgattttctcttcaacatgtatggtttcttctcctttgc |
2271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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