View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_20 (Length: 397)
Name: NF10129_low_20
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 12339333 - 12339702
Alignment:
| Q |
11 |
caaaggacaacaggtcttacaccaattctatacaatgcttcttcgacgaagtttctgaatccatcgtacacatcacataacatggaaccaacattggtgc |
110 |
Q |
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| T |
12339333 |
caaaggacaacaggtcttacaccaattctatacaatgcttcttcaacgaagtttctaaatccatcgtacacatcacataacatggaaccaacattagtgc |
12339432 |
T |
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| Q |
111 |
ataactctccaacggtgtccattgactccactgccgcatcatatgccgaataaaaagccatacctcttttactgacatctgatacataaaacctttgaaa |
210 |
Q |
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| T |
12339433 |
ataactctccaacggtgtccattgactccactgccgcatcatatgccgagtaaaaagccatacctcttttactgacatctgatacataaaacctttg--a |
12339530 |
T |
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| Q |
211 |
acactttggaattttattgtaggaatctttacaaacgatgtcgaccactcttcttctgtaggatatcttgctttgaattgactcatggttttgttaagac |
310 |
Q |
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| T |
12339531 |
acactttggaattttattgtaggaatctttacaaacgatgtcgaccactcttcttctgtaggatatcttgctttgaattgactcatggttttgttaagat |
12339630 |
T |
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| Q |
311 |
gcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggttgatgtagcagaagtggtt |
382 |
Q |
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| T |
12339631 |
gcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggttgatatagcagaagtggtt |
12339702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 12347530 - 12347703
Alignment:
| Q |
122 |
acggtgtccattgactccactgccgcatcatatgccgaataaaaag---------ccatacctctttt-actgacatctgatacataaaacctttgaaaa |
211 |
Q |
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| T |
12347530 |
acggggtccattgactccattgccgcatcatataccgaattaaaagtcatactgcccatacctctttttactgacatctgatacataaaacctttgaa-- |
12347627 |
T |
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| Q |
212 |
cactttggaattttattgtaggaatctttacaaacgatgtcgaccactcttcttctgtaggatatcttgctttgaa |
287 |
Q |
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| T |
12347628 |
cactttggaattttattttaggaatctttacaaacgatgtcaaccactcttcttatgtgggatatattgctttgaa |
12347703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 12393224 - 12393315
Alignment:
| Q |
27 |
ttacaccaattctatacaatgcttcttcgacgaagtttctgaatccatcgtacacatcacataacatggaaccaacattggtgcataactct |
118 |
Q |
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| T |
12393224 |
ttacaccaattccgtacaatgcttcttccacggaacttctgaatccatggtacacgtcgcataacatagaaccaacgttagtgcacaactct |
12393315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 12347409 - 12347466
Alignment:
| Q |
11 |
caaaggacaacaggtcttacaccaattctatacaatgcttcttcgacgaagtttctga |
68 |
Q |
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| T |
12347409 |
caaatgacaacaggtcttacatcaattctatacaacgcttgctcgacggaatttctga |
12347466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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