View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_22 (Length: 388)
Name: NF10129_low_22
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 55096475 - 55096118
Alignment:
| Q |
21 |
aatacaatggcaatcaaagtcttctaattcacagaaatataactaacttagggaaaacaatatagggatagcctatattatttatacggcaaatctgatt |
120 |
Q |
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| T |
55096475 |
aatataatggcaatcaaagtcttctaattcacagaaatataactaacttagggaaaacaatatagggatagcctatattatttatacggcaaatctgatt |
55096376 |
T |
|
| Q |
121 |
tgaaaattaaactcactttgaattagtagttttgatcgaatgattgcagattgtatgattccataggttcatgatgacaggaaactggggtccgtttatc |
220 |
Q |
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| T |
55096375 |
tgaaaattaaactcactttgaattagtagttttgatcgaatgattgcagattgtatgattccatatgttcatgatgacaggaaactggggtccgtttatc |
55096276 |
T |
|
| Q |
221 |
aattatctgagcaaatcattgatatataatcatactgcctctatttttgtctttctgtggctaaggtaccttttatgcttgttttcccgtctttaccata |
320 |
Q |
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| T |
55096275 |
aattatctgagcaaatcattgatatataatcatactgcctctatttttgtctttctgtggctaaggtaccttttatgcttgtttt-ccgtctttaccata |
55096177 |
T |
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| Q |
321 |
tttggtaaggcaagggaatttctttttcccaaaggatgccatttaaagaccacctttgc |
379 |
Q |
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| T |
55096176 |
tttggtaaggcaagggaatttctttttcccaaaggatgccatttaaagaccacctttgc |
55096118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 55097730 - 55097368
Alignment:
| Q |
21 |
aatacaatggcaatcaaagtcttctaattcacagaaatataactaa-cttagggaaaacaatatagggatagcctatattatttatacggcaaatctgat |
119 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||||| ||| ||| ||||| ||||| || ||||| ||| |
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| T |
55097730 |
aatacaatggcaatcaaagtcttctaattcacaaaaatacaaataatcttaaggaaaacaatatacggagagctcatatt-tttatttggtaaatcagat |
55097632 |
T |
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| Q |
120 |
ttgaaaatt--aaactcac--tttgaattag-tagttttgatcgaatgat-------tgcagattgtatgattccataggttcatgatgacaggaaactg |
207 |
Q |
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||||||| | ||||||| ||||| || |||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||| | |
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| T |
55097631 |
ttgaaaacttaaaactcaaaatttgagttgtctagttttgatcgaatggtcttgacttacagattgtatgattgcatagcttcatgatgacaggaaattt |
55097532 |
T |
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| Q |
208 |
gggtccgtttatcaattatctgagcaaatcattgatatataatcatactgcctctat-ttttgtctttctgtggctaaggtaccttttatgcttgttttc |
306 |
Q |
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|||| || ||||| ||||||| || |||||||||||||||||||| ||||||||| |||| ||| |||| | ||||| |||||||| |||| ||| |
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| T |
55097531 |
aagtccattcatcaaatatctgatcacatcattgatatataatcatattgcctctattttttttctccctgtttc-aaggtgtcttttatgattgtgttc |
55097433 |
T |
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| Q |
307 |
ccgtctttaccatatttggtaaggcaaggga-attt-ctttttcccaaaggatgccatttaaaga |
369 |
Q |
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| T |
55097432 |
ccatatttaccatatttggttaggtaagacacatttgctttatcccaaaggattccatttaaaga |
55097368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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