View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_23 (Length: 380)
Name: NF10129_low_23
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 30576190 - 30576551
Alignment:
| Q |
1 |
attatattgaagaaagaaccattgattaatggatcagcattacattaaatttatatacaagagggatgaggaggactattacattgaagctatagtaatg |
100 |
Q |
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| T |
30576190 |
attatattgaagaaagaaccattgattaatggatcagcattacattaaatttatatacaagatggatgaggaggactattacattgaagctatagtaatg |
30576289 |
T |
|
| Q |
101 |
aaaataacaattcaccaaactttgtaattggcaagaaccagaatcaagaatgtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaaccaagaa |
200 |
Q |
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| T |
30576290 |
aaaataacaattcagcaaactttgtaattggcaagaaccagaatcaagaatgtgtgaagtgtgaacaatattgttgtgtgaccttgttaggaacgaagat |
30576389 |
T |
|
| Q |
201 |
attgaattgaataaaaagaacatttctgttaagaaaataggaaagagaactctcttccaagggtttccctatcgacaacagagccactgatctattcaca |
300 |
Q |
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| T |
30576390 |
attgaattgaataaaaagaacatttctgttaagaaaataggaaagagaactctcttccaagggtttccctatcgacaacagaaccactgatctattcaca |
30576489 |
T |
|
| Q |
301 |
gaatattaacaaatctcaattcctccctatccttccattctcctatttatacacgcaactca |
362 |
Q |
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| T |
30576490 |
gaatattaacaaatctcaattcctccctatacttccattctcctatttatacacgcaactca |
30576551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 21524287 - 21524226
Alignment:
| Q |
185 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
246 |
Q |
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| T |
21524287 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21524226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 21534847 - 21534786
Alignment:
| Q |
185 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
246 |
Q |
| |
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|||||||||||||||| ||| ||| |||| |||||||| | | |||||||||||||||||| |
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| T |
21534847 |
tgttaggaaccaagaatttgtattcaatagaaagaacacatttattaagaaaataggaaaga |
21534786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 20642045 - 20642106
Alignment:
| Q |
185 |
tgttaggaaccaagaaattgaattgaataaaaagaacatttctgttaagaaaataggaaaga |
246 |
Q |
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|||||||||||||||| ||| ||| |||| |||||| | || | |||||||||||||||||| |
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| T |
20642045 |
tgttaggaaccaagaatttgtattcaatagaaagaaaacttttattaagaaaataggaaaga |
20642106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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