View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_24 (Length: 367)

Name: NF10129_low_24
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_24
NF10129_low_24
[»] chr6 (25 HSPs)
chr6 (11-352)||(20747042-20747409)
chr6 (254-352)||(11533714-11533813)
chr6 (254-352)||(11559224-11559323)
chr6 (254-352)||(11569704-11569803)
chr6 (254-352)||(6406872-6406972)
chr6 (261-352)||(12689953-12690045)
chr6 (254-352)||(33686656-33686755)
chr6 (256-352)||(17963572-17963670)
chr6 (256-352)||(16835175-16835274)
chr6 (254-352)||(19994397-19994496)
chr6 (254-352)||(2699126-2699227)
chr6 (78-136)||(20768811-20768870)
chr6 (256-352)||(25313487-25313585)
chr6 (256-352)||(26200981-26201079)
chr6 (261-352)||(17600364-17600454)
chr6 (78-136)||(20756590-20756649)
chr6 (254-349)||(12405372-12405469)
chr6 (260-352)||(11612921-11613015)
chr6 (261-342)||(19674767-19674849)
chr6 (254-348)||(11428945-11429041)
chr6 (256-352)||(17914576-17914675)
chr6 (254-352)||(22694397-22694495)
chr6 (306-352)||(5856969-5857015)
chr6 (261-352)||(12797801-12797898)
chr6 (285-352)||(22610495-22610563)
[»] chr8 (16 HSPs)
chr8 (254-349)||(17021243-17021339)
chr8 (254-349)||(17551680-17551776)
chr8 (254-352)||(2966569-2966669)
chr8 (254-352)||(15950584-15950684)
chr8 (254-352)||(1808435-1808534)
chr8 (268-352)||(26780088-26780173)
chr8 (254-352)||(38181294-38181394)
chr8 (256-352)||(40124908-40125006)
chr8 (261-352)||(7002629-7002722)
chr8 (254-352)||(18875397-18875497)
chr8 (254-352)||(44924933-44925033)
chr8 (254-352)||(28564309-28564407)
chr8 (285-352)||(28559160-28559228)
chr8 (254-341)||(1909959-1910048)
chr8 (261-340)||(17953166-17953246)
chr8 (273-352)||(33417514-33417595)
[»] chr4 (24 HSPs)
chr4 (254-352)||(31728378-31728477)
chr4 (254-352)||(8694697-8694797)
chr4 (254-352)||(12822922-12823022)
chr4 (254-352)||(16422030-16422130)
chr4 (254-352)||(5270435-5270534)
chr4 (254-352)||(19907273-19907372)
chr4 (254-352)||(55252628-55252729)
chr4 (261-352)||(2820776-2820869)
chr4 (254-352)||(31274498-31274598)
chr4 (254-352)||(37263575-37263675)
chr4 (254-352)||(51698913-51699013)
chr4 (261-352)||(37258882-37258975)
chr4 (285-352)||(29349250-29349317)
chr4 (254-344)||(33468015-33468106)
chr4 (254-352)||(13060450-13060551)
chr4 (253-352)||(40408931-40409029)
chr4 (254-352)||(32220576-32220676)
chr4 (261-342)||(19102960-19103043)
chr4 (254-352)||(13064825-13064922)
chr4 (261-352)||(19107562-19107656)
chr4 (254-344)||(32081180-32081269)
chr4 (265-355)||(12875385-12875477)
chr4 (306-352)||(6943768-6943814)
chr4 (261-352)||(47245114-47245205)
[»] chr3 (19 HSPs)
chr3 (254-352)||(18468196-18468296)
chr3 (254-352)||(757376-757476)
chr3 (254-352)||(18472990-18473090)
chr3 (254-352)||(20520945-20521045)
chr3 (254-352)||(20175377-20175474)
chr3 (261-352)||(55326761-55326854)
chr3 (254-352)||(7570227-7570327)
chr3 (254-352)||(23660501-23660601)
chr3 (254-352)||(23665133-23665233)
chr3 (254-352)||(46964997-46965096)
chr3 (268-352)||(27709915-27709998)
chr3 (254-351)||(3426058-3426154)
chr3 (271-352)||(14437719-14437802)
chr3 (262-352)||(12970828-12970920)
chr3 (254-352)||(12964895-12964995)
chr3 (261-352)||(55432211-55432302)
chr3 (261-352)||(3656276-3656369)
chr3 (285-352)||(7860692-7860760)
chr3 (306-352)||(39774891-39774937)
[»] scaffold0054 (2 HSPs)
scaffold0054 (254-352)||(30161-30261)
scaffold0054 (272-352)||(26425-26507)
[»] chr5 (24 HSPs)
chr5 (254-352)||(6154444-6154544)
chr5 (254-352)||(6511615-6511715)
chr5 (254-352)||(26668262-26668362)
chr5 (254-352)||(26939859-26939959)
chr5 (254-352)||(29166985-29167085)
chr5 (254-352)||(7452739-7452839)
chr5 (254-352)||(36424622-36424722)
chr5 (254-352)||(36430502-36430602)
chr5 (254-352)||(37247811-37247911)
chr5 (254-352)||(37536949-37537050)
chr5 (254-352)||(10759373-10759473)
chr5 (254-352)||(37646067-37646169)
chr5 (254-352)||(17162841-17162941)
chr5 (254-352)||(20180167-20180265)
chr5 (285-352)||(40148827-40148893)
chr5 (261-352)||(35678917-35679010)
chr5 (261-342)||(4872876-4872959)
chr5 (256-329)||(39524031-39524106)
chr5 (306-352)||(12104038-12104084)
chr5 (263-352)||(17159361-17159452)
chr5 (256-329)||(39519392-39519467)
chr5 (254-338)||(23757176-23757262)
chr5 (254-338)||(23822632-23822718)
chr5 (285-352)||(23689055-23689123)
[»] chr2 (23 HSPs)
chr2 (254-352)||(29678662-29678762)
chr2 (254-352)||(17974363-17974462)
chr2 (254-352)||(12797913-12798014)
chr2 (254-352)||(25496396-25496496)
chr2 (254-352)||(17967976-17968075)
chr2 (254-352)||(9179738-9179840)
chr2 (254-352)||(18345400-18345500)
chr2 (254-352)||(25477301-25477401)
chr2 (254-352)||(30651898-30651998)
chr2 (261-352)||(9184436-9184531)
chr2 (254-352)||(19896934-19897032)
chr2 (254-352)||(20101662-20101762)
chr2 (285-352)||(15446327-15446394)
chr2 (254-352)||(12361233-12361329)
chr2 (268-352)||(24537049-24537135)
chr2 (285-352)||(40846626-40846694)
chr2 (254-352)||(19891519-19891617)
chr2 (261-352)||(31329046-31329139)
chr2 (261-352)||(31335767-31335860)
chr2 (261-342)||(42925695-42925776)
chr2 (254-319)||(1934021-1934088)
chr2 (254-317)||(28604105-28604169)
chr2 (254-342)||(44630459-44630550)
[»] scaffold0057 (1 HSPs)
scaffold0057 (254-352)||(36106-36205)
[»] chr7 (19 HSPs)
chr7 (254-348)||(42625590-42625686)
chr7 (254-352)||(3046558-3046657)
chr7 (254-352)||(12257006-12257105)
chr7 (254-352)||(4931207-4931307)
chr7 (254-352)||(21672189-21672288)
chr7 (284-352)||(12181795-12181864)
chr7 (254-352)||(23247571-23247670)
chr7 (254-322)||(12802297-12802366)
chr7 (306-352)||(9814941-9814987)
chr7 (306-352)||(10716866-10716912)
chr7 (254-344)||(23151698-23151792)
chr7 (261-342)||(30259256-30259339)
chr7 (254-344)||(3880960-3881055)
chr7 (273-352)||(13313345-13313426)
chr7 (254-352)||(10392099-10392201)
chr7 (285-352)||(26286204-26286270)
chr7 (285-344)||(26342199-26342257)
chr7 (265-332)||(2595774-2595843)
chr7 (261-352)||(4580449-4580542)
[»] chr1 (11 HSPs)
chr1 (254-352)||(10136309-10136409)
chr1 (254-355)||(38622170-38622273)
chr1 (254-352)||(16648641-16648742)
chr1 (254-352)||(25844740-25844840)
chr1 (261-352)||(16036590-16036683)
chr1 (261-352)||(19798012-19798107)
chr1 (261-340)||(23191858-23191937)
chr1 (254-344)||(51040533-51040625)
chr1 (285-352)||(12260960-12261027)
chr1 (271-352)||(11807203-11807286)
chr1 (261-342)||(46697309-46697390)
[»] scaffold0002 (2 HSPs)
scaffold0002 (254-352)||(442952-443051)
scaffold0002 (256-352)||(5048-5146)
[»] scaffold0352 (1 HSPs)
scaffold0352 (254-352)||(8093-8193)
[»] scaffold0240 (1 HSPs)
scaffold0240 (254-352)||(4956-5053)
[»] scaffold0011 (1 HSPs)
scaffold0011 (261-352)||(64913-65006)
[»] scaffold0690 (1 HSPs)
scaffold0690 (254-352)||(6216-6316)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 20747042 - 20747409
Alignment:
Q  11 cagagacaaatttataggtaaatttcattagctttttatttacgatagaggattatactagaaacacacacatgcaaataattaaactatatagaattgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20747042 cagagacaaatttataggtaaatttcattagctttttatttacgatagaggattatactagaaacacacacatgcaaataattaaactatatagaattgg 20747141  T
Q  111 tagccctagaggcatgccaacaccaaaatagttaaactaaaagtttgcataatattattgttagaattagaagatgaaaattttagttggtcaggttata 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20747142 tagccctagaggcatgccaacaccaaaatagttaaaataaaagtttgcataatattattgttagaattagaagatgaaaattttagttggtcaggttata 20747241  T
Q  211 ttaaaaagtatctcttggaacattgg---------tgaaggaaattgggaaga---------------ttatattttgatctaatgttgtgggaattg-a 285  Q
    ||||||||||||||||||||||||||         ||||||||| | ||||||               ||||| |||||| |||||||||| |||||| |    
T  20747242 ttaaaaagtatctcttggaacattggtgttaagtttgaaggaaaattggaagattaaacatcaagtaattatactttgatttaatgttgtgtgaattgaa 20747341  T
Q  286 aaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  20747342 aaaatagagtgtgggggtcctacataaaatagaacttacacattagtagtgtttaaattgcggtattt 20747409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 11533714 - 11533813
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||||||| || |||||||||| | |||||||||||||| || ||||| |||||||||||||||||||||||    
T  11533714 attatagtttgatctaatgttgtgtgaattgaaaaaataaagtgtggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtattt 11533813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 11559224 - 11559323
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||||||| || |||||||||| | |||||||||||||| || ||||| |||||||||||||||||||||||    
T  11559224 attatagtttgatctaatgttgtgtgaattgaaaaaatacagtgtggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtattt 11559323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 11569704 - 11569803
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||| || ||||| | |||||||||||||||||||||    
T  11569704 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattggaagtgtttaaattgcggtattt 11569803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 6406872 - 6406972
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttc-tacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||| ||||||| ||||||||||| |||||||||||| || | ||||||||||||| || ||||||||||||||||||||| ||||||    
T  6406872 attatactttgatctattgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 6406971  T
Q  352 t 352  Q
    |    
T  6406972 t 6406972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 12690045 - 12689953
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||||||| |||||||||| || | |||||||||||||| || ||||||||||||||||||| |||||||||    
T  12690045 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggagtcccacataaaatagaacacacacattagtagtgtttaaatagcggtattt 12689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 33686656 - 33686755
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||| |||| | | |||||||||||||||| || |||||||    
T  33686656 attatactttgatctaattttgtgtgaattgaaaaaatagagtgtggggttccacataaaataaaacttacaaattagtagtgtttaaactgtggtattt 33686755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 17963572 - 17963670
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| |||||||||||| |||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| |||||||    
T  17963572 tatactttgatctaatgatgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 17963670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 16835175 - 16835274
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa--tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| ||||||||||||||||| ||||| |||||  |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| |||||||    
T  16835175 tatactttgatctaatgttgtgtgaattaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 16835274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 19994397 - 19994496
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaatagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||| ||| |||||| || ||||| ||||||||||||||||| ||  || ||||||||||| || |||||||||||||||||||||||||||||    
T  19994397 attatactttaatcgaatgttatgtgaattaaaaaatagagtgtgggggtcccacgtaaaatagaacacacacattagtagtgtttaaattgcggtattt 19994496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 2699126 - 2699227
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaata--gagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| ||| ||||||||||||| |||| | ||||||  |||||||||| ||  ||||||||||||| ||| |||||||||||||||||||||||||||    
T  2699126 attatactttaatctaatgttgtgtgaatggtaaaatatagagtgtgggggtcccacataaaatagaattcacacattagtagtgtttaaattgcggtat 2699225  T
Q  351 tt 352  Q
    ||    
T  2699226 tt 2699227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 20768811 - 20768870
Alignment:
Q  78 acacatgcaaataattaaactatatagaattggtag-ccctagaggcatgccaacaccaa 136  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  20768811 acacatgcaaagaattaaactatatagaattggtagaccctagagacatgccaacaccaa 20768870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 25313487 - 25313585
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| |||||| ||||||| |  ||||||||||| ||||||||| || ||  |||||||||||||| |||| |||||||||||||||||||||||||||    
T  25313487 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtattt 25313585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 26200981 - 26201079
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| |||||| ||||||| |  ||||||||||| ||||||||| || ||  |||||||||||||| |||| |||||||||||||||||||||||||||    
T  26200981 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtattt 26201079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 17600454 - 17600364
Alignment:
Q  261 tttgatctaatgttgtgggaattga-aaaatagagtgtg-gggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||| | |||||||||||||| || ||||   |||||||||||||| |||||||    
T  17600454 tttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggtcccacataaaatagaacacaaacat---tagtgtttaaattgtggtattt 17600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 20756590 - 20756649
Alignment:
Q  78 acacatgcaaataattaaactatatagaattggtag-ccctagaggcatgccaacaccaa 136  Q
    ||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||    
T  20756590 acacatgcaaagaattaaactatatagaattggtggaccctagagacatgccaacaccaa 20756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 12405372 - 12405469
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggta 349  Q
    ||||||||||||||||||||||||  |||| ||||| |||||||||| | ||  | |||||||||||| || |||||||||||| |||||||| ||||    
T  12405372 attatattttgatctaatgttgtgttaattaaaaaaatagagtgtggagatcacaaataaaatagaacacacacattagtagtgattaaattgaggta 12405469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 11612921 - 11613015
Alignment:
Q  260 ttttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||| |   |||||||||| |||||||| | ||| | |||||||||| ||| || |||||||||||||||||||| ||||||||    
T  11612921 ttttgatctaatgttatataaattgaaaaaatagagtgttgaggtcccacataaaataaaacacacacattagtagtgtttaaatttcggtattt 11613015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 19674849 - 19674767
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaatagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaat 342  Q
    ||||||||| ||||||| |||||| |||| | ||||||||| ||  |||||||||||||| || |||| ||||||||||||||    
T  19674849 tttgatctagtgttgtgtgaattggaaaaaatagtgtgggggtccgacataaaatagaacacacacatcagtagtgtttaaat 19674767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 11429041 - 11428945
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggt 348  Q
    |||||| ||||||||||||||| | ||||||| |||||||||||| ||||| | |||| ||||||| | || ||||| ||||| |||||| ||||||    
T  11429041 attatactttgatctaatgttgcgtgaattgaaaaaatagagtgtgggggtcccacattaaatagagcacacacatttgtagtatttaaactgcggt 11428945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 17914675 - 17914576
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa--tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| |||||||||||||||||  |||| |||||  |||||||| | ||| ||||||||||| |||| || |||||| |||||||| |||| ||||||||    
T  17914675 tatactttgatctaatgttgtgtaaattaaaaaaaatagagtgttgaggtcctacataaaatggaacacacacattaatagtgttttaattacggtattt 17914576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 22694397 - 22694495
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaatagagtgtgg-ggttctacataaaatagaactcatacat-tagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| | ||| ||| ||| | |||||||||||||| || |||| ||| |||||||||||||| |||||    
T  22694397 attatactttgatctaatgttgtgtgaattgaaaaa-atagtttggaggtcccacataaaatagaacacacacatctag-agtgtttaaattgccgtatt 22694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 5857015 - 5856969
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||| ||||||  | |||||||||||||||||||||||||||||    
T  5857015 acataaactagaacatacacattagtagtgtttaaattgcggtattt 5856969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 12797801 - 12797898
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtg-gggttctacataaaatagaa----ctcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||||||| ||||||||| |||| | |||||||||||||    | || ||| ||||||||||||||| | |||||||    
T  12797801 tttgatctagtgttgtgtgaattgaaaaaatagagtgtgtgggtcccacataaaatagaaaacacacacacactagtagtgtttaaatagtggtattt 12797898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 22610563 - 22610495
Alignment:
Q  285 aaaaatagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| |||||  |||| |||||||||| ||| || ||||||||||||||||||||  |||||||    
T  22610563 aaaaatagattgtggcagttccacataaaataaaacacacacattagtagtgtttaaattttggtattt 22610495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 17021339 - 17021243
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggta 349  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||    
T  17021339 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggta 17021243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 17551776 - 17551680
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggta 349  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||    
T  17551776 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggta 17551680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 2966669 - 2966569
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtg-gggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||| |||| | | |||||||||||| || ||||||||||||||||||||||||||||    
T  2966669 attatatttttatctaatgttatgggaattgaaaaaatagagtgtgagggtcccatataaaatagaacacacacattagtagtgtttaaattgcggtatt 2966570  T
Q  352 t 352  Q
    |    
T  2966569 t 2966569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 15950584 - 15950684
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| ||| | |||||||||||||| || |||||| |||||||||||||||||||||    
T  15950584 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggaggtgccacataaaatagaacacacacattaatagtgtttaaattgcggtatt 15950683  T
Q  352 t 352  Q
    |    
T  15950684 t 15950684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 1808534 - 1808435
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||||||| || |||||||||| | | |||||||||||| || ||||||| |||||||||||||||||||||    
T  1808534 attatactttgatctaatgttgtgtgaattgaaaaaatatagtgtggggtcccatataaaatagaacacacacattagaagtgtttaaattgcggtattt 1808435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 26780173 - 26780088
Alignment:
Q  268 taatgttgtgggaattgaaaaatagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||| |||||||||| ||||||||||| || | |||||||||||||| || |||||||||||||||||||||||||||||    
T  26780173 taatgttgtgtgaattgaaaactagagtgtgggtgtcccacataaaatagaacacacacattagtagtgtttaaattgcggtattt 26780088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 38181294 - 38181394
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| || |||||| | || | |||||||||||||| || ||||||||||||||||||||||||||||    
T  38181294 attatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgagagtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatt 38181393  T
Q  352 t 352  Q
    |    
T  38181394 t 38181394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 40124908 - 40125006
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| |||||||    
T  40124908 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtattt 40125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 7002722 - 7002629
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| | ||||| ||||||||||| |||||||||||| ||| |||||||||||||  |||||||||||||||||||||||| |||||||    
T  7002722 tttgatctagtattgtgtgaattgaaaaaatagagtgtggggatctcacataaaatagaatacatacattagtagtgtttaaattgtggtattt 7002629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 18875397 - 18875497
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||| ||||||||||||||||||| ||||||||||| ||| |||| ||||| | ||||| |||||||| || | ||||||||||||||||||||||||||    
T  18875397 attaaattttgatctaatgttgtgtgaattgaaaaaatagtgtgtaggggtcccacatacaatagaacacacatattagtagtgtttaaattgcggtatt 18875496  T
Q  352 t 352  Q
    |    
T  18875497 t 18875497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 44924933 - 44925033
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaat-agagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||| ||| ||| | |||||||||||||  || ||||||||||||||||||||||||||||    
T  44924933 attatactttgatctaatcttgtgtgaattgaaaaattagagtttggaggtcccacataaaatagaaaacacacattagtagtgtttaaattgcggtatt 44925032  T
Q  352 t 352  Q
    |    
T  44925033 t 44925033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 28564309 - 28564407
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||||||||||||||   ||||||||| | ||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  28564309 attatactttgatctaatgttgtgtacattgaaaaa-atagtgtggaggttccacataaaatagaacacacacattagtagtgtttaaattacggtattt 28564407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 28559160 - 28559228
Alignment:
Q  285 aaaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||| ||| | |||||||||||||| || |||||||||||||||||||||||||||||    
T  28559160 aaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtattt 28559228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 1909959 - 1910048
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaa 341  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||  || | |||| ||||||| |||| ||||||||||||||||||    
T  1909959 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggatgtcccacatgaaatagagctcacacattagtagtgtttaaa 1910048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 17953166 - 17953246
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaa 340  Q
    ||||||||| ||||||| |||||||||| |||||||||||||| | ||| |||||||||| || |||| ||||||||||||    
T  17953166 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggggtaccacaaaaaatagaacacacacatcagtagtgtttaa 17953246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 33417595 - 33417514
Alignment:
Q  273 ttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||| ||||||||||| ||||||||  || ||| |||||||||||||| || ||||||||||||||||||||| |||||||    
T  33417595 ttgtgtgaattgaaaaaatagagtgtatgggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtattt 33417514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 31728378 - 31728477
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||| || ||||||||||||||||||||| |||||||    
T  31728378 attataatttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 31728477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 8694797 - 8694697
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  8694797 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 8694698  T
Q  352 t 352  Q
    |    
T  8694697 t 8694697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 12822922 - 12823022
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  ||||||||||||||||| |||||||||||||||||| || ||||||    
T  12822922 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaactgtggtatt 12823021  T
Q  352 t 352  Q
    |    
T  12823022 t 12823022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 16422130 - 16422030
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| ||  |||||||||||||||||||||||||||    
T  16422130 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacgcattagtagtgtttaaattgcggtatt 16422031  T
Q  352 t 352  Q
    |    
T  16422030 t 16422030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 5270435 - 5270534
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||||||| |||| |||||||| | |||||||||||||| || ||||||||||| ||||||||| |||||||    
T  5270435 attatactttgatctaatgttgtgtgaattgaaaaaatagaatgtggggtcccacataaaatagaacacacacattagtagtatttaaattgtggtattt 5270534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 19907372 - 19907273
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||||| ||||||| ||||||||||| || ||||||||||   |||||||||||||| || ||||||| |||||||||||||||||||||    
T  19907372 attatattttgatctagtgttgtgtgaattgaaaaaataaagtgtggggtctcacataaaatagaacacacacattagcagtgtttaaattgcggtattt 19907273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 55252729 - 55252628
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa--tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| |||||| |||||||||| |||||||||||  |||||||||| ||| | |||||||||||||| || |||||||||||||||||||||||||||    
T  55252729 attatactttgatttaatgttgtgtgaattgaaaaaaatagagtgtggtggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtat 55252630  T
Q  351 tt 352  Q
    ||    
T  55252629 tt 55252628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 2820869 - 2820776
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaat-agagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| |||||||||||| ||||||||||| ||  |||||||||||||| || |||||||||||||||||||||||||||||    
T  2820869 tttgatctagtgttgtgtgaattgaaaaattagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtattt 2820776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 31274598 - 31274498
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  31274598 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 31274499  T
Q  352 t 352  Q
    |    
T  31274498 t 31274498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 37263575 - 37263675
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  37263575 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 37263674  T
Q  352 t 352  Q
    |    
T  37263675 t 37263675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 51699013 - 51698913
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||| ||||||||| | ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  51699013 attatactttgaactaatgttgcgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatt 51698914  T
Q  352 t 352  Q
    |    
T  51698913 t 51698913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 37258882 - 37258975
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| |||||||    
T  37258882 tttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtattt 37258975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 29349250 - 29349317
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||| ||| | ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  29349250 aaaaatagagtgtgaggtcccacataaaatagaactcacacattagcagtgtttaaattgcggtattt 29349317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 33468015 - 33468106
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattg 344  Q
    |||||| |||||||||||||||||  ||||||||| ||||||||| || | | |||||||||||||| || |||||||||||||||||||||    
T  33468015 attatactttgatctaatgttgtgtaaattgaaaaaatagagtgtaggttcccacataaaatagaacacacacattagtagtgtttaaattg 33468106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 13060551 - 13060450
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa--tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| ||||||||||| ||||| |||||||||||  |||||||||| | ||  |||||||| |||||||| ||||| |||||||||||||||||||||    
T  13060551 attatactttgatctaatattgtgtgaattgaaaaaaatagagtgtggtggtcacacataaaaaagaactcacacattggtagtgtttaaattgcggtat 13060452  T
Q  351 tt 352  Q
    ||    
T  13060451 tt 13060450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 40409029 - 40408931
Alignment:
Q  253 gattatattttgatctaatgttgtgggaattgaaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||| ||||||||||||||||  ||||| ||||| | |||||||||| | | |||||||||||| || | |||| ||||||||||||||||||||||    
T  40409029 gattatactttgatctaatgttgtatgaattaaaaaa-atagtgtggggtaccaaataaaatagaacacacatattattagtgtttaaattgcggtattt 40408931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 32220576 - 32220676
Alignment:
Q  254 attatattttgatctaatgttgtgggaatt-gaaaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||||||||||| ||||| |||||  ||||||||||||| ||||| | ||||||||||||||  | |||||| ||||||||||||| || ||||    
T  32220576 attatattttgatctaatattgtgtgaattaaaaaaatagagtgtgggggtcccacataaaatagaacatacacattattagtgtttaaattccgatatt 32220675  T
Q  352 t 352  Q
    |    
T  32220676 t 32220676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 19103043 - 19102960
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    ||||||||| ||||||| ||||||||||| |||||||||| ||| | |||||||||||||| || |||||| ||||||||||||    
T  19103043 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaat 19102960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 13064825 - 13064922
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||    ||||||||||| |||||||||||| ||  |||||||||||||| || |||| | |||||||||||||||||||||    
T  13064825 attatactttgatctaatgttt---gaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacatcaatagtgtttaaattgcggtatt 13064921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 19107656 - 19107562
Alignment:
Q  261 tttgatctaa-tgttgtgggaattgaaaa-atagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||| | ||||| |||||||||| ||||||||||| ||| | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  19107656 tttgatctaagtattgtgtgaattgaaaatatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattt 19107562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 32081180 - 32081269
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattg 344  Q
    |||||| |||||||||||||   | ||||||||||| |||||||||| ||| | || |||||||||||||| |||||||||||||||||||||    
T  32081180 attatactttgatctaatgt---gtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaactcacacattagtagtgtttaaattg 32081269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 12875477 - 12875385
Alignment:
Q  265 atctaatgttgtgggaattgaaaaa-tagagtgtggggttc-tacataaaatagaactcatacattagtagtgtttaaattgcggtatttgat 355  Q
    ||||| ||||||| ||||||||||| |||||||||||| || | ||||||||||||| || ||||||||| | ||||||| | ||||||||||    
T  12875477 atctagtgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaatagaacccacacattagtaatatttaaatagtggtatttgat 12875385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 6943814 - 6943768
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||    
T  6943814 acataaaatagaacacatacattagtaatgtttaaattgctgtattt 6943768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 47245205 - 47245114
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaatagagtgtggggttc-tacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| | ||||| ||||||||||| | ||||||||| || || |||||||||||| || |||||| |||||||||||| ||| |||||    
T  47245205 tttgatctagtattgtgtgaattgaaaaa-atagtgtggggatcctaaataaaatagaacacacacattattagtgtttaaatagcgatattt 47245114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 18468296 - 18468196
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa--tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| |||||||||||  |||||||||||| ||||||||| ||||||| || ||||||||||||||||||||| ||||||    
T  18468296 attatagtttgatctaatgttgtgtgaattgaaaaaaatagagtgtgggggtctacataatatagaacacacacattagtagtgtttaaattgtggtatt 18468197  T
Q  352 t 352  Q
    |    
T  18468196 t 18468196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 757376 - 757476
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||| || ||||||||||||||||||||| ||||||    
T  757376 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatt 757475  T
Q  352 t 352  Q
    |    
T  757476 t 757476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 18473090 - 18472990
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  18473090 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 18472991  T
Q  352 t 352  Q
    |    
T  18472990 t 18472990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 20521045 - 20520945
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||  || ||||||||||||||||||||||||||||    
T  20521045 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaatacacacattagtagtgtttaaattgcggtatt 20520946  T
Q  352 t 352  Q
    |    
T  20520945 t 20520945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 20175474 - 20175377
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||||||||| |||||||||||||  || ||||||||||| |||||||||| ||||||    
T  20175474 attatactttgatctaatgttgtgttaattgaaaaaatagagtgtggggttccacataaaatagaa--cacacattagtagtatttaaattgcagtattt 20175377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 55326854 - 55326761
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| ||||||||||| || ||||||||| ||  |||||||||||||| || ||||||||||||||||||||| |||||||    
T  55326854 tttgatctaatgttgtgtgaattgaaaaaatatagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 55326761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 7570227 - 7570327
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || | ||||||||||||||||||| ||||||    
T  7570227 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacatattagtagtgtttaaattgtggtatt 7570326  T
Q  352 t 352  Q
    |    
T  7570327 t 7570327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 23660501 - 23660601
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| | ||  |||||||||| ||| || ||||||||||||||||||||| ||||||    
T  23660501 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggagctcccacataaaataaaacacacacattagtagtgtttaaattgtggtatt 23660600  T
Q  352 t 352  Q
    |    
T  23660601 t 23660601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 23665133 - 23665233
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| | ||  | |||||||||||| || ||||||||||||||||||||| ||||||    
T  23665133 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggagctcccatataaaatagaacacacacattagtagtgtttaaattgtggtatt 23665232  T
Q  352 t 352  Q
    |    
T  23665233 t 23665233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 46965096 - 46964997
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtg-gggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||| |||  | ||||||||||||||||| |||||| ||||||||||| |||||||||    
T  46965096 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggccccacataaaatagaactcacacatta-tagtgtttaaactgcggtatt 46964998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 27709998 - 27709915
Alignment:
Q  268 taatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||| ||||||||||| ||||||||||||| | |||||||||||||  ||||| |||||||||||||||||| |||||||    
T  27709998 taatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaa--catacgttagtagtgtttaaattgtggtattt 27709915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 3426154 - 3426058
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaatagagtgtggggtt-ctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||| |||| |||||||| |||||  |||||||| ||||||| | | ||||||||||||||||| |||||||||||||||||| |||||||||    
T  3426154 attatactttaatcttatgttgtgtgaatt--aaaatagaatgtgggggtaccacataaaatagaactcacacattagtagtgtttaaactgcggtatt 3426058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 14437719 - 14437802
Alignment:
Q  271 tgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||| ||||||||||| |||||||||| | ||| |||||||||||||| || ||||||||||||||||||||| |||||||    
T  14437719 tgttgtgtgaattgaaaaaatagagtgtggaggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtattt 14437802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 352
Target Start/End: Original strand, 12970828 - 12970920
Alignment:
Q  262 ttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||| |||||||||| ||||||||||| || ||||||| | ||  |||||||||||||| || || ||||||||||||||||||||||||||    
T  12970828 ttgatttaatgttgtgtgaattgaaaaaataaagtgtggtgatcccacataaaatagaacacacactttagtagtgtttaaattgcggtattt 12970920  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 12964895 - 12964995
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa--tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| |||||| ||||||||   |||||||||||  |||||||||| ||| | |||||||||| ||| || || ||||||||||||||||||||||||    
T  12964895 attatactttgatttaatgttgcatgaattgaaaaaaatagagtgtggtggtcccacataaaata-aacacaaactttagtagtgtttaaattgcggtat 12964993  T
Q  351 tt 352  Q
    ||    
T  12964994 tt 12964995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 55432302 - 55432211
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||| |||| ||||||||||| || ||||||||| ||  ||| |||||||||| ||  ||||||||||||||||||||| ||||||    
T  55432302 tttgatctaatgctgtgtgaattgaaaaaataaagtgtgggggtcccacacaaaatagaacaca--cattagtagtgtttaaattgcagtattt 55432211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 3656276 - 3656369
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| || ||||||| ||||||||||| |||| ||| ||||| | |||||||||||||| |  ||||||||||||||||||| | |||||||    
T  3656276 tttgatttagtgttgtgtgaattgaaaaaatagaatgtaggggtcccacataaaatagaacacggacattagtagtgtttaaatagtggtattt 3656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 7860760 - 7860692
Alignment:
Q  285 aaaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||| ||| | |||||||||||||| || |||||| |||||||||||||  |||||||    
T  7860760 aaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaattatggtattt 7860692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 39774891 - 39774937
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||| || | ||||||||||||||||||| |||||||    
T  39774891 acataaaatagaacacacatattagtagtgtttaaattgtggtattt 39774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 30261 - 30161
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||| ||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  30261 attatattttgatctaatgttgtgtgaattgaaaaaatagagtgtagggatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatt 30162  T
Q  352 t 352  Q
    |    
T  30161 t 30161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 26507 - 26425
Alignment:
Q  272 gttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||| ||||||| || ||| | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  26507 gttgtgtgaattgaaaaaatagagtgcggaggtcccacataaaatagaacacacacattagtagtgtttaaatagaggtattt 26425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 6154444 - 6154544
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  6154444 attatattttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 6154543  T
Q  352 t 352  Q
    |    
T  6154544 t 6154544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 6511615 - 6511715
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||||||||||||||||| ||||||||||| |  |||||||| || | ||||||||||||||||| |||||||||||||||||||||| |||||    
T  6511615 attatattttgatctaatgttgtgtgaattgaaaaaattaagtgtgggagtcccacataaaatagaactcacacattagtagtgtttaaattgcagtatt 6511714  T
Q  352 t 352  Q
    |    
T  6511715 t 6511715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 26668362 - 26668262
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  26668362 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 26668263  T
Q  352 t 352  Q
    |    
T  26668262 t 26668262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 26939959 - 26939859
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  26939959 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 26939860  T
Q  352 t 352  Q
    |    
T  26939859 t 26939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 29166985 - 29167085
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtg-gggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| |||||| |||||||||| ||||||||||| ||||||||| |||| |||||||||||||||| || ||||||||||||||||||||| ||||||    
T  29166985 attatactttgatttaatgttgtgtgaattgaaaaaatagagtgtgagggtcctacataaaatagaacacacacattagtagtgtttaaattgtggtatt 29167084  T
Q  352 t 352  Q
    |    
T  29167085 t 29167085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 7452839 - 7452739
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| | ||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  7452839 attatactctgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 7452740  T
Q  352 t 352  Q
    |    
T  7452739 t 7452739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 36424722 - 36424622
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| | ||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||| || |||||||||||| |||||||| ||||||    
T  36424722 attatactatgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacacacattagtagtgcttaaattgtggtatt 36424623  T
Q  352 t 352  Q
    |    
T  36424622 t 36424622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 36430602 - 36430502
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||  ||||||    
T  36430602 attatattttaatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattatggtatt 36430503  T
Q  352 t 352  Q
    |    
T  36430502 t 36430502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 37247811 - 37247911
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  37247811 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 37247910  T
Q  352 t 352  Q
    |    
T  37247911 t 37247911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 37536949 - 37537050
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatac--attagtagtgtttaaattgcggtat 350  Q
    |||||| |||||| |||||||||| |||||||||| |||||||||||||| | |||||||||||||| || ||  ||||||||||||||||||| |||||    
T  37536949 attatactttgatataatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacatattagtagtgtttaaattgtggtat 37537048  T
Q  351 tt 352  Q
    ||    
T  37537049 tt 37537050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 10759373 - 10759473
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    ||||||||||||| |||||||||| ||||| ||||| |||||||| ||||| | ||||||||||||||  | |||||||||||||||||||||| |||||    
T  10759373 attatattttgatttaatgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacagacacattagtagtgtttaaattgcagtatt 10759472  T
Q  352 t 352  Q
    |    
T  10759473 t 10759473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 37646067 - 37646169
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgt-ggggttctacataaaatagaactcatac--attagtagtgtttaaattgcggta 349  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||| ||||| | |||||||||||||| || ||  |||| |||||||||||||| ||||    
T  37646067 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacatattattagtgtttaaattgtggta 37646166  T
Q  350 ttt 352  Q
    |||    
T  37646167 ttt 37646169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 17162941 - 17162841
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||| ||| ||||||||||||||  ||||||||||| |||| |||||| || | |||||||||||||| || |||||||| |||||||||||| ||||||    
T  17162941 attagattatgatctaatgttgtatgaattgaaaaaatagaatgtgggagtcccacataaaatagaacacacacattagtggtgtttaaattgaggtatt 17162842  T
Q  352 t 352  Q
    |    
T  17162841 t 17162841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 20180167 - 20180265
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||| ||||||||||||| ||||||| |||||||  ||||||   | |||||||||||||| || |||||||||||||||||||| ||||||||    
T  20180167 attatactttaatctaatgttgtgtgaattgagaaaataggatgtgggaccc-acataaaatagaacacacacattagtagtgtttaaattacggtattt 20180265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 40148893 - 40148827
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||||| | | ||||||||||||||  | |||||||||||||||||||||||||||||    
T  40148893 aaaaatagagtgtggg-tcccacataaaatagaacaaacacattagtagtgtttaaattgcggtattt 40148827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 35678917 - 35679010
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||||||| ||||||||  | || | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  35678917 tttgatctagtgttgtgtgaattgaaaaaatagagtgtaagagtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattt 35679010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 4872959 - 4872876
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtgggg-ttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    |||||| || ||||||| ||||||||||| |||||||||||| ||| | |||||||||||| || ||| |||||||||||||||    
T  4872959 tttgatttagtgttgtgtgaattgaaaaaatagagtgtgggggttccatataaaatagaacacacacaatagtagtgtttaaat 4872876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 39524106 - 39524031
Alignment:
Q  256 tatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttcta-cataaaatagaactcatacatta 329  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||||| || | ||||||||||||| || ||||||    
T  39524106 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtccagcataaaatagaacacacacatta 39524031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 12104084 - 12104038
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||    
T  12104084 acataaaatggaacacacacattagtagtgtttaaattgcggtattt 12104038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 17159452 - 17159361
Alignment:
Q  263 tgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||| ||||||  ||||||||||| |||| |||||| || | |||||||||||||  || ||||||||||||||| ||||| |||||||    
T  17159452 tgatctagtgttgtatgaattgaaaaaatagaatgtgggtgtcccacataaaatagaagacacacattagtagtgttttaattgaggtattt 17159361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 39519467 - 39519392
Alignment:
Q  256 tatattttgatctaatgttgtgggaattga-aaaatagagtgt-ggggttctacataaaatagaactcatacatta 329  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| ||||| |  ||||||||||||| || ||||||    
T  39519467 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacatta 39519392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 23757176 - 23757262
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgttt 338  Q
    |||||| || ||| |||||||||| |||||| ||||||||||||| ||||| | ||| |||||||||| || |||||| ||||||||    
T  23757176 attatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacacaaaatagaacacacacattattagtgttt 23757262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 23822632 - 23822718
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgttt 338  Q
    |||||| || ||| |||||||||| |||||| ||||||||||||| ||||| | ||| |||||||||| || |||||| ||||||||    
T  23822632 attatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacacaaaatagaacacacacattattagtgttt 23822718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 23689123 - 23689055
Alignment:
Q  285 aaaaatagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||||||| ||  |||||||||||||| || ||||| |||||||| |||||| |||||||    
T  23689123 aaaaattgagtgtggggatcccacataaaatagaacacacacattcgtagtgttaaaattgtggtattt 23689055  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 29678762 - 29678662
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||| ||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  29678762 attatattttgatctaatgttgtgtgaattgaaaaaatagagtgtagggatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatt 29678663  T
Q  352 t 352  Q
    |    
T  29678662 t 29678662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 17974363 - 17974462
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||| || | |||||||||||||| || ||||||||||||||||||||| |||||||    
T  17974363 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggtgtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 17974462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 12798014 - 12797913
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggg--gttctacataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||  || | |||||||||||||| || |||||||||||||||||||||||||||    
T  12798014 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtat 12797915  T
Q  351 tt 352  Q
    ||    
T  12797914 tt 12797913  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 25496396 - 25496496
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||||| ||| | |||||||||||||| || ||||||||||||||||||||||||||||    
T  25496396 attatactttgatctaatattgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatt 25496495  T
Q  352 t 352  Q
    |    
T  25496496 t 25496496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 17967976 - 17968075
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||| |||| |||||||||||||| | |||||||||||||| || | ||||||||||||||||||| |||||||    
T  17967976 attatactttgatctaatgttgtgtgaattaaaaaaatagagtgtggggtcccacataaaatagaacacacatattagtagtgtttaaattgtggtattt 17968075  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 9179738 - 9179840
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa---tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggta 349  Q
    |||||| ||||||||||||||||| |||||||||||   |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||    
T  9179738 attatactttgatctaatgttgtgtgaattgaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggta 9179837  T
Q  350 ttt 352  Q
    |||    
T  9179838 ttt 9179840  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 18345500 - 18345400
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||| ||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  18345500 attatactttgatctaatgttgtgtgaattaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 18345401  T
Q  352 t 352  Q
    |    
T  18345400 t 18345400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 25477301 - 25477401
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| |||||| |||||||||| ||||| ||||| |||||||||| | ||| |||||||||||||| || ||||||||||||||||||||||||||||    
T  25477301 attatactttgatttaatgttgtgcgaattaaaaaaatagagtgtggtggtcttacataaaatagaacacacacattagtagtgtttaaattgcggtatt 25477400  T
Q  352 t 352  Q
    |    
T  25477401 t 25477401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 30651998 - 30651898
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  30651998 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 30651899  T
Q  352 t 352  Q
    |    
T  30651898 t 30651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 9184436 - 9184531
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa---tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| |||||||||||   |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| |||||||    
T  9184436 tttgatctaatgttgtgtgaattgaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 9184531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 19897032 - 19896934
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||  |||||||||||||| ||  |||||||||||||||||||||||||||    
T  19897032 attatattttgatataatgttgtgtgaattgaaaaaatagagcgtgggggtcccacataaaatagaacaca--cattagtagtgtttaaattgcggtatt 19896935  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 20101662 - 20101762
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||  | ||||||||||| |||||||| | |||||    
T  20101662 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtcggggttccacataaaatagaacatacacattagtagtatttaaattactgtatt 20101761  T
Q  352 t 352  Q
    |    
T  20101762 t 20101762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 15446327 - 15446394
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||| |||||||    
T  15446327 aaaaatagagtgttgggtcccacataaaatagaacacatacattagtagtgtttaaattgtggtattt 15446394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 12361329 - 12361233
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||| |||||| |||||||||||||   | ||||||||||||||||||||| |||||||    
T  12361329 attatactttgatctaatgttgtgtgaattgaaaaaatagaatgt-gggttccacataaaatagaa--gacacattagtagtgtttaaattgtggtattt 12361233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 24537049 - 24537135
Alignment:
Q  268 taatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||| ||||||||||| |||||||||||| ||  |||||||||| ||| ||||||||||||||||||||| | ||||||||    
T  24537049 taatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatataacacatacattagtagtgtttaaactacggtattt 24537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 40846626 - 40846694
Alignment:
Q  285 aaaaatagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| |||||||    
T  40846626 aaaaatagagtgtggggatcccacataaaatagaacacacacattagtagtgtttaaattgtggtattt 40846694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 19891519 - 19891617
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||| ||||| |||||| ||||||||| |||||| || | |||||||||||||  || |||||| |||||||||||||| ||||||    
T  19891519 attatactttgatctaatcttgtgtgaattgaaaaaatagaatgtgggagtcccacataaaatagaa--cacacattattagtgtttaaattgtggtatt 19891616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 31329139 - 31329046
Alignment:
Q  261 tttgatctaatgttgtgggaattga-aaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||| |||||||||||||| ||| | || |||||||||||  | || |||||||||||||||| | |||||||    
T  31329139 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacaaacacgttagtagtgtttaaatagtggtattt 31329046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 31335860 - 31335767
Alignment:
Q  261 tttgatctaatgttgtgggaattga-aaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||| |||||||||||||| ||| | || |||||||||||  | || |||||||||||||||| | |||||||    
T  31335860 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacaaacacgttagtagtgtttaaatagtggtattt 31335767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 42925695 - 42925776
Alignment:
Q  261 tttgatctaatgttgtgggaattg-aaaaatagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    ||||||||| ||||||| |||||| ||||||||||||||| ||| | || ||||||||||  || |||||||||||||||||||    
T  42925695 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaa--cacacattagtagtgtttaaat 42925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 1934021 - 1934088
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgtgg-ggttctacataaaatagaac 319  Q
    |||||| ||||||||||||||||| |||||| |||||||||||| || ||| | ||||||||||||||    
T  1934021 attatactttgatctaatgttgtgtgaattgaaaaaatagagtggggaggtcccacataaaatagaac 1934088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 28604169 - 28604105
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttctacataaaataga 317  Q
    |||| ||||||||||| ||||||| ||||||| |||||||||| || ||| | ||||||||||||    
T  28604169 attaaattttgatctagtgttgtgtgaattgaaaaaatagagtatgcggtcccacataaaataga 28604105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 44630459 - 44630550
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa--tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    |||| ||||||||||| ||||||| |||||||||||  ||||   ||| ||| | |||||||||||||| || ||||||||| |||||||||    
T  44630459 attaaattttgatctagtgttgtgtgaattgaaaaaaatagaacttggaggtcccacataaaatagaacacacacattagtattgtttaaat 44630550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 36205 - 36106
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||  | |||||||||||||||||  ||||||||||||||||| ||||||||||    
T  36205 attatattttgatctaatgttgtatgaattgaaaaaatagagtgtggggccccacataaaatagaactcacgcattagtagtgtttaaactgcggtattt 36106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 42625590 - 42625686
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggt 348  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||||    
T  42625590 attatactttgatctaatgttatgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaattgcggt 42625686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 3046657 - 3046558
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||| ||| |||||| ||||||||||| |  |||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||    
T  3046657 attataatttgatataaagttgtgtgaattgaaaaaattaagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtattt 3046558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 12257105 - 12257006
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||| ||||||||||  |||||||||| ||||||||||||| | |||||||||||||| ||  |||||||||||||||||||| |||||||    
T  12257105 attatactttgatttaatgttgtgtaaattgaaaaaatagagtgtggggtcccacataaaatagaacacacgcattagtagtgtttaaattgtggtattt 12257006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 4931307 - 4931207
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| |||||| |||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  4931307 attatactttgatataatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 4931208  T
Q  352 t 352  Q
    |    
T  4931207 t 4931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 21672288 - 21672189
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||||||| |||||| ||||||||||| |||| |||||| | | |||||||||||| | || ||||||||| |||||||||||||||||||    
T  21672288 attatactttgatctaacgttgtgtgaattgaaaaaatagaatgtgggatcccacataaaatagagcacacacattagtactgtttaaattgcggtattt 21672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 12181795 - 12181864
Alignment:
Q  284 gaaaaatagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||||||| ||  |||||||||||||| || |||||||||||||||||||||||||||||    
T  12181795 gaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtattt 12181864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 23247571 - 23247670
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| |||||||||||||| || |||||||||| |||||||||  ||| | || ||||||||||  || |||||||||||||||||||| ||||||||    
T  23247571 attatactttgatctaatgttatgtgaattgaaaaaatagagtgtatggtcccacctaaaatagaaaacaaacattagtagtgtttaaattacggtattt 23247670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 12802366 - 12802297
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactca 322  Q
    |||||| ||| ||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||    
T  12802366 attatactttaatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaactca 12802297  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 9814941 - 9814987
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  9814941 acataaaatagaacacatacattagtagtttttaaattgcggtattt 9814987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 10716866 - 10716912
Alignment:
Q  306 acataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  10716866 acataaaatagaacacatacattagtagtttttaaattgcggtattt 10716912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 23151698 - 23151792
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgtggg-gttctacataaaatagaactcatac--attagtagtgtttaaattg 344  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||||| || |  ||||||||||||| || ||  |||||||||||||||||||    
T  23151698 attatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccgcataaaatagaacacacacatattagtagtgtttaaattg 23151792  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 30259339 - 30259256
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    ||||||||| |||| ||  |||||||||| ||||||||||| | || |||||||||||| | ||||||||||||||||||||||    
T  30259339 tttgatctagtgttttgtaaattgaaaaaatagagtgtgggagatccacataaaatagatcacatacattagtagtgtttaaat 30259256  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 3881055 - 3880960
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttct-acataaaatagaactcata---cattagtagtgtttaaattg 344  Q
    |||||| ||||||||||| ||| | ||||||| |||||||||||||||| ||| |||||||||||||| || |   ||||||||||| ||||||||    
T  3881055 attatactttgatctaatattgcgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacacacatcattagtagtgcttaaattg 3880960  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 13313345 - 13313426
Alignment:
Q  273 ttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||| ||||||||||| ||||||||||  || | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  13313345 ttgtgtgaattgaaaaaatagagtgtggatgtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattt 13313426  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 10392099 - 10392201
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg---aaaaatagagtgtg-gggttctacataaaatagaactcatacattagtagtgtttaaattgcggta 349  Q
    |||||| ||||||||| ||||||| ||||||   |||||||||||||| |||  | |||||||||||||| || |  |||  ||||||||||||||||||    
T  10392099 attatactttgatctagtgttgtgtgaattgaaaaaaaatagagtgtgagggccccacataaaatagaacacacatgttatcagtgtttaaattgcggta 10392198  T
Q  350 ttt 352  Q
    |||    
T  10392199 ttt 10392201  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 26286204 - 26286270
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||| ||| ||||| | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  26286204 aaaaatagtgtg-ggggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattt 26286270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 26342257 - 26342199
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattg 344  Q
    |||||||| ||| ||||| | |||||||||||||| || |||||||||||||||||||||    
T  26342257 aaaaatagtgtg-ggggtcccacataaaatagaacacacacattagtagtgtttaaattg 26342199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 2595843 - 2595774
Alignment:
Q  265 atctaatgttgtgggaattga-aaaatagagtgtggg-gttctacataaaatagaactcatacattagta 332  Q
    ||||||||||||| ||||||| |||||||||||||||  | | |||||||||||||| || |||||||||    
T  2595843 atctaatgttgtgtgaattgaaaaaatagagtgtgggtatcccacataaaatagaacacacacattagta 2595774  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 4580542 - 4580449
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| || ||||||| ||||| ||||| |||||||| ||||| | | |||||||||||| || |||||||||||||||| || | |||||||    
T  4580542 tttgatttagtgttgtgtgaattaaaaaaatagagtgtaggggtcccatataaaatagaacacacacattagtagtgtttatatagtggtattt 4580449  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 10136409 - 10136309
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||||||| || ||||||||||||||||||||| ||||||    
T  10136409 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatt 10136310  T
Q  352 t 352  Q
    |    
T  10136309 t 10136309  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 38622273 - 38622170
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||| | |||||||||||||||| ||| |||||    
T  38622273 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccacataaaatagaactcacatattagtagtgtttaaaatgcagtatt 38622174  T
Q  352 tgat 355  Q
    ||||    
T  38622173 tgat 38622170  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 16648641 - 16648742
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgt--ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtat 350  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||  ||||| | |||||||||||||| || |||||||||||||||||||||||||||    
T  16648641 attatactttgatctaatgttgtgtaaattgaaaaaatagagtgtagggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtat 16648740  T
Q  351 tt 352  Q
    ||    
T  16648741 tt 16648742  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 25844840 - 25844740
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| || ||||||||||||||||||||| ||||||    
T  25844840 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatt 25844741  T
Q  352 t 352  Q
    |    
T  25844740 t 25844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 16036683 - 16036590
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||||||||| |||||||||| ||| | |||||||||||||| || ||||||||||||||||||| | |||||||    
T  16036683 tttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattt 16036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 19798012 - 19798107
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa--tagagtgtgggg--ttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||||||||||| |||||||||||  || |||||||||  | | ||||||||||||||||  | |||||||||||||||||||||||||||    
T  19798012 tttgatctaatgttgtgtgaattgaaaaaaataaagtgtggggggtcccacataaaatagaactcgcatattagtagtgtttaaattgcggtattt 19798107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 23191858 - 23191937
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaa 340  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| || |||||||||||||| || |||||||||||||||||    
T  23191858 tttgatctagtgttgtgtgaattgaaaaaatagagtgtgggggtc-acataaaatagaacacacacattagtagtgtttaa 23191937  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 51040533 - 51040625
Alignment:
Q  254 attatattttgatctaatgttgtgggaattg-aaaaatagagtgtggg-gttctacataaaatagaactcatacattagtagtgtttaaattg 344  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||||| || | |||| ||||||||| || |||||||||||||||||||||    
T  51040533 attatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccacatgaaatagaacacacacattagtagtgtttaaattg 51040625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 12261027 - 12260960
Alignment:
Q  285 aaaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||||||||||||||| | |||||||||||||| ||  |||||||||||||||||| | |||||||    
T  12261027 aaaaatagagtgtggggtcccacataaaatagaacacactcattagtagtgtttaaatagtggtattt 12260960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 11807286 - 11807203
Alignment:
Q  271 tgttgtgggaattgaaaaa-tagagtgtgggg-ttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||| ||||||||||| ||||||| || | ||| |||||||||||||| || ||||||| ||||||||||||| |||||||    
T  11807286 tgttgtgtgaattgaaaaaatagagtgcggagattccacataaaatagaacacacacattagcagtgtttaaattgtggtattt 11807203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 46697390 - 46697309
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaat 342  Q
    |||||| || ||||||| ||||||||||| |||||| |||| | | |||||||||| ||| |||||||||||| |||||||||    
T  46697390 tttgatttagtgttgtgtgaattgaaaaaatagagtatggg-tcccacataaaatataacacatacattagtaatgtttaaat 46697309  T

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Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 442952 - 443051
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaa-atagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||| || |||||||| | |||||||||| |||||||    
T  442952 attatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagttgggtttaaattgtggtattt 443051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 5146 - 5048
Alignment:
Q  256 tatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttcta-cataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||| ||   ||||||||||||| |  ||||||||||||||||||||| |||||||    
T  5146 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacactcacattagtagtgtttaaattgtggtattt 5048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 8193 - 8093
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtggggttct-acataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| |||||| |||||||||| ||||||||||| |||||||||||| ||  |||||| ||||||| || ||||||||||||||||||||| ||||||    
T  8193 attatactttgatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataagatagaacacacacattagtagtgtttaaattgtggtatt 8094  T
Q  352 t 352  Q
    |    
T  8093 t 8093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 5053 - 4956
Alignment:
Q  254 attatattttgatctaatgttgtgggaattga-aaaatagagtgtggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    |||||| ||||||||||||||||| ||||||| |||||| |||||||||| | |||||||||| ||| |||  |||||| |||||||| |||||||||||    
T  5053 attatactttgatctaatgttgtgtgaattgaaaaaatatagtgtggggtaccacataaaatataacacat--attagttgtgtttaagttgcggtattt 4956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 64913 - 65006
Alignment:
Q  261 tttgatctaatgttgtgggaattgaaaaa-tagagtgt-ggggttctacataaaatagaactcatacattagtagtgtttaaattgcggtattt 352  Q
    ||||||||| ||||||| ||||| ||||| |||||||| ||||| | |||||||||||||| || ||||||||||| ||||||| | |||||||    
T  64913 tttgatctagtgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacacacacattagtagtctttaaatagtggtattt 65006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 6316 - 6216
Alignment:
Q  254 attatattttgatctaatgttgtgggaattgaaaaa-tagagtgtgg-ggttctacataaaatagaactcatacattagtagtgtttaaattgcggtatt 351  Q
    |||||| || ||||||||||| || ||||||||||| |||||||| | ||| | |||||| ||||||  || |||||||| |||||||||||| ||||||    
T  6316 attatacttcgatctaatgttatgtgaattgaaaaaatagagtgttgaggtcccacataagatagaatacacacattagtggtgtttaaattgtggtatt 6217  T
Q  352 t 352  Q
    |    
T  6216 t 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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