View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_26 (Length: 364)

Name: NF10129_low_26
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_26
NF10129_low_26
[»] chr4 (2 HSPs)
chr4 (109-347)||(55907344-55907582)
chr4 (19-84)||(55907245-55907310)
[»] chr2 (4 HSPs)
chr2 (109-347)||(1036086-1036324)
chr2 (251-347)||(1036422-1036518)
chr2 (19-84)||(1035987-1036052)
chr2 (195-246)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (196-264)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (194-247)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (199-264)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (218-258)||(10168825-10168865)
chr7 (218-258)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 109 - 347
Target Start/End: Original strand, 55907344 - 55907582
Alignment:
Q  109 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  209 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  309 aaaggttcacctacattacctaccttgatcttagttcct 347  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcct 55907582  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 55907245 - 55907310
Alignment:
Q  19 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 84  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907245 cacagaaagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

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Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 109 - 347
Target Start/End: Original strand, 1036086 - 1036324
Alignment:
Q  109 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  209 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  309 aaaggttcacctacattacctaccttgatcttagttcct 347  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcct 1036324  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 1036422 - 1036518
Alignment:
Q  251 cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcct 347  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcct 1036518  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 1035987 - 1036052
Alignment:
Q  19 cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 84  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1035987 cacagaaagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  195 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 246  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  196 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 264  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  194 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 247  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  199 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 264  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  218 gtctccaaacagtttctctcagtcaccaacactcttcgatt 258  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  218 gtctccaaacagtttctctcagtcaccaacactcttcgatt 258  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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