View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_27 (Length: 362)
Name: NF10129_low_27
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 34220339 - 34220004
Alignment:
| Q |
18 |
caggccccttgtacagttttgtctttgtcccctatcgtacgtcttgtatgatacgtgttgtttaataaatatgctgattcataaaaaatactgtttaatg |
117 |
Q |
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| T |
34220339 |
caggccccttgtacagttttgtctttgtcccctatcgtacgtcttgtatgataccggttgtttaataaatatgctgattcataaaaa-tactgtttaatg |
34220241 |
T |
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| Q |
118 |
ccatgcaccaaaatatttaagtgctttggaatcatggtgggtgagctacctacatagcttttactcgctatgattttgacaaactcaacgatgccatgat |
217 |
Q |
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| T |
34220240 |
ccatgcaccaaaatatttaagtgctttggaatcatggtgggtgagccacctacatagcttttactcgctatgattttgacaaactcaacgatgccatgat |
34220141 |
T |
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| Q |
218 |
accaaacatgcatactaagcctctgatcattctgttaacactctcaatcgattgaagcttaacacaggtacgaagacaactataataaatatatac--ag |
315 |
Q |
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| T |
34220140 |
accaaacatgcatactaagcctctgatcattctgttaacactctcaatcgattgaagcttaacacaggtacgaagacaactataataaatatatacaaag |
34220041 |
T |
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| Q |
316 |
acagaaagaaaatcttttaccaagagttgttcctttg |
352 |
Q |
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| T |
34220040 |
acggaaagaaaatcttttaccaagagttgttcctttg |
34220004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 34208994 - 34208924
Alignment:
| Q |
233 |
taagcctctgatcattctgttaacactctcaatcgattgaagcttaacacaggtacgaagacaactataat |
303 |
Q |
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| T |
34208994 |
taagcctctgatcattctattatcactctcaatggattaaacctaaacacaggtacaaagacaacaataat |
34208924 |
T |
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