View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_28 (Length: 357)
Name: NF10129_low_28
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 3587171 - 3586833
Alignment:
| Q |
2 |
taatccagagtaaaaatccatatactcgtgcacaattcagcgagctcacgtacgaacttaattnnnnnnntgtatttaaactcttggcaaccgaatacag |
101 |
Q |
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| T |
3587171 |
taatccagagtaaaaatccacatacccgtgcacaattcagcgagctcacgtacgaacttaattaaaaaaatgtatttaaacttttagcaaccgaatacag |
3587072 |
T |
|
| Q |
102 |
gttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgcacatcaatgaaacaataagcattccacgacc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587071 |
gttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgcacatcaatgaaacaataagcattccacgacc |
3586972 |
T |
|
| Q |
202 |
attttagcccagagattgtagcgaatgacttagataaaatacaaatcataccgtaacggtttgagaacgcccaaacctgaactagttttaaagggaagtc |
301 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3586971 |
attttagcccagagattgtagcgaacgacttagataaaatacaaatcataccgtaacggtttgagaacacccaaacctgaactagttttaaagggaagtc |
3586872 |
T |
|
| Q |
302 |
aattattgaagaccatcgacaactgaagcaaacacatat |
340 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||| |
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| T |
3586871 |
aatttttgaggaccatcgacaactgaagcaaacacatat |
3586833 |
T |
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