View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_low_29 (Length: 351)
Name: NF10129_low_29
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 43275233 - 43274909
Alignment:
| Q |
17 |
atttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccctggcttgattgggtgacccatgtttcaggattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
43275233 |
atttaagaagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccttggcttgattgggtgacccatgtttctggattt |
43275134 |
T |
|
| Q |
117 |
tatgcaagagcnnnnnnngtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatcaatcgcgagaaaggagtcaatgaagaccatg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43275133 |
tatgcaagagcaaaaaaagtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatcaatcgtcagaaaggagtcaatgaagaccatg |
43275034 |
T |
|
| Q |
217 |
atgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43275033 |
atgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaa |
43274934 |
T |
|
| Q |
317 |
attaaaatctctttcttaccctttg |
341 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
43274933 |
attaaaatctctttgttaccctttg |
43274909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 328
Target Start/End: Complemental strand, 43268336 - 43268032
Alignment:
| Q |
24 |
aagttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccctggcttgattgggtgacccatgtttcaggattttatgcaa |
123 |
Q |
| |
|
||||| |||| ||| |||| |||| |||| |||||||| ||||||| | ||||||||| |||||||||||| | | |||| ||||||||| |||||||| |
|
|
| T |
43268336 |
aagttattgatggattttactgagttacttggtgcttttgttgttggggactatgttccttggcttgattggttcagccatctttcaggatattatgcaa |
43268237 |
T |
|
| Q |
124 |
gagcnnnnnnngtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatcaatcgcgagaaaggagtcaatgaagaccatgatgactt |
223 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| | ||| |||||||||||||| ||| |||||||| | ||| || ||||||||||| |
|
|
| T |
43268236 |
gagcaaaaaaggtggctaaacaatttgatgatcttttggagggtgttgttgaagatcatatgaataatccgaaaggagatagtgacgagcatgatgactt |
43268137 |
T |
|
| Q |
224 |
tgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaaattaaaa |
323 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||| | ||||| ||||| ||| ||||| |||||||| ||||| |
|
|
| T |
43268136 |
tgttgaagttttgctttggatccaaagaacagaatcacttggctttcctattgacaaaacggtcataaaggctctactactggtatgtgtaaaactaaaa |
43268037 |
T |
|
| Q |
324 |
tctct |
328 |
Q |
| |
|
||||| |
|
|
| T |
43268036 |
tctct |
43268032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 43310906 - 43310761
Alignment:
| Q |
45 |
gagtcacttagtgcttttattgttggagcctatgttccctggcttgattgggtgacccatgtttcaggattttatgcaagagcnnnnnnngtggctaaac |
144 |
Q |
| |
|
|||| |||| || ||||| ||||||| | ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
43310906 |
gagttacttggtacttttgttgttggtgactatgttccttggcttgattggatgaccaatgtttctggattttatgcaagagcaaaaaaagttgctaaac |
43310807 |
T |
|
| Q |
145 |
aatttgatgaacttttggaagatgtagttgaagatcatatcaatcg |
190 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
43310806 |
agtttgatgatcttttggaggatgtagttgaagatcatatcaatcg |
43310761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 43310706 - 43310598
Alignment:
| Q |
218 |
tgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| | |||| | || || || || ||||||||||||||||| |
|
|
| T |
43310706 |
tgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctattgacaaaacagtcattaaggccctgttattggtaagtgtaaaa |
43310607 |
T |
|
| Q |
318 |
ttaaaatct |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
43310606 |
ctaaaatct |
43310598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University