View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_3 (Length: 615)

Name: NF10129_low_3
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_3
NF10129_low_3
[»] chr6 (7 HSPs)
chr6 (190-597)||(24882858-24883264)
chr6 (1-134)||(24883264-24883397)
chr6 (172-268)||(32590713-32590809)
chr6 (395-489)||(32601544-32601638)
chr6 (396-489)||(32591076-32591169)
chr6 (172-268)||(32601184-32601280)
chr6 (286-331)||(32601397-32601442)
[»] chr1 (9 HSPs)
chr1 (264-331)||(34594429-34594496)
chr1 (391-461)||(34594626-34594696)
chr1 (195-268)||(34578555-34578628)
chr1 (396-489)||(34578890-34578983)
chr1 (195-268)||(34594259-34594332)
chr1 (396-489)||(35124578-35124671)
chr1 (288-330)||(34578745-34578787)
chr1 (195-268)||(35124248-35124321)
chr1 (286-331)||(35124433-35124478)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 190 - 597
Target Start/End: Complemental strand, 24883264 - 24882858
Alignment:
Q  190 atttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacctttctttgggggttacatcatt 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883264 atttgactcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggtacctttctttgggggttacatcatt 24883165  T
Q  290 attctcacaattatcatacttcaagtagtcaattccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883164 attctcacaattatcatacttcaagtagtcaattccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatat 24883065  T
Q  390 atatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883064 atatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 24882965  T
Q  490 tagatagatgtgaaaattgttgatcaatcacaaatattaaaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttaga 589  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24882964 tacatagatgtgaaaattgttgatcaatcacaaatatt-aaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttaga 24882866  T
Q  590 cctttgct 597  Q
    ||||||||    
T  24882865 cctttgct 24882858  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 24883397 - 24883264
Alignment:
Q  1 ccaactatttcccacactcttcccccatattgatgggtcttctgctcccctatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883397 ccaactatttcccacactcttcccccatattgacgggtcttctgctcccctatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagt 24883298  T
Q  101 tgcttctagcattataaattgttcttgagtgata 134  Q
    | ||||||||||||||||||||||||||||||||    
T  24883297 ttcttctagcattataaattgttcttgagtgata 24883264  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 32590713 - 32590809
Alignment:
Q  172 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 268  Q
    |||||||||| ||||| ||||  |||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| |||||    
T  32590713 tgagaaacattatcactaattcaactcaccattcacacacagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct 32590809  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 489
Target Start/End: Original strand, 32601544 - 32601638
Alignment:
Q  395 ttacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 489  Q
    ||||||| |||||||||||||| |||||||||  |||||| |||| |||||| ||||| | |||||| || |||||||||||||| || ||||||    
T  32601544 ttacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt 32601638  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 32591076 - 32591169
Alignment:
Q  396 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 489  Q
    |||||| |||||||||||||| |||||||||  |||||| || |||||||| ||||| | |||||| || |||||||||||||| || ||||||    
T  32591076 tacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt 32591169  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 32601184 - 32601280
Alignment:
Q  172 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 268  Q
    |||||||||| |||||||||    ||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| |||||    
T  32601184 tgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacct 32601280  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 32601397 - 32601442
Alignment:
Q  286 cattattctcacaattatcatacttcaagtagtcaattccctaaag 331  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  32601397 cattattttcacaattatcatacttcaaatagtcgactccctaaag 32601442  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 34594429 - 34594496
Alignment:
Q  264 tacctttctttgggggttacatcattattctcacaattatcatacttcaagtagtcaattccctaaag 331  Q
    ||||||||||| ||| ||| | |||| || |||||||||||||||||||| |||||||||||||||||    
T  34594429 tacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaag 34594496  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 34594626 - 34594696
Alignment:
Q  391 tatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttact 461  Q
    |||| |||||| |||||||||||||| ||||||||||||||||| || | |||||| ||||| | ||||||    
T  34594626 tataatacccaagaagcaaatgttttagcatcttgttcttcatgtcccagtgatccaggcatgcgtttact 34594696  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 34578555 - 34578628
Alignment:
Q  195 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 268  Q
    |||||||||||||||| |||| ||||||||| |||||| || | || ||||||||||| |||| |||| |||||    
T  34578555 actcaccattcacacatagagaagaagattggccttccggagtttaataaagcttcactcattggtggatacct 34578628  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 34578890 - 34578983
Alignment:
Q  396 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 489  Q
    |||||| |||||||||||||| |||||||||  |||||| || | |||||| ||||| | |||||| || ||| |||||||||| | |||||||    
T  34578890 tacccaagaagcaaatgttttggcatcttgtatttcatgtcccagtgatccaggcatacgtttactacaagttagatttctgcataaaaattgt 34578983  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 34594259 - 34594332
Alignment:
Q  195 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 268  Q
    ||||||||||||||||  ||| |||||||||||||||||||||  | ||| ||||||| |||| | ||||||||    
T  34594259 actcaccattcacacattgagaagaagattgaccttccagatttcattaaggcttcactcattggcgggtacct 34594332  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 35124578 - 35124671
Alignment:
Q  396 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 489  Q
    |||||| |||||||||||||| |||||||||  |||||| |||| |||||| ||||| | |||||| || ||| ||||||| || | |||||||    
T  35124578 tacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatgcgtttactacaagttagatttctacataaaaattgt 35124671  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 34578745 - 34578787
Alignment:
Q  288 ttattctcacaattatcatacttcaagtagtcaattccctaaa 330  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||    
T  34578745 ttattttcacaattatcatacttcaaatagtcaactccctaaa 34578787  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 35124248 - 35124321
Alignment:
Q  195 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacct 268  Q
    |||||||||||||||| |||| |||||||||  |||||||| | ||  || ||||||| |||| ||||||||||    
T  35124248 actcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggtacct 35124321  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 35124433 - 35124478
Alignment:
Q  286 cattattctcacaattatcatacttcaagtagtcaattccctaaag 331  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  35124433 cattattttcacaattatcatacttcaaatagtcgactccctaaag 35124478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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