View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_32 (Length: 345)
Name: NF10129_low_32
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 36309386 - 36309710
Alignment:
| Q |
11 |
agcaaagggtgcaaaacaacctccgattcaacctgcgtggcatagagaacttctaaacgcaagagatcctccacatgtcacattcaaccaccgcgaatac |
110 |
Q |
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| T |
36309386 |
agcaaagggtgcaaaacaacctccgattcaacctgcgtggcatagagagcttctaaacgcaagagatcctccacatgtcacattcaaccaccgcgaatac |
36309485 |
T |
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| Q |
111 |
gaacaactaactgatgtccaaactgataccgttttaacggcaacagaattttcagaacgatctttcttctttggacctgtggagatatctgcaatacgaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36309486 |
gaacaactaactgatgtccaaactgataccgttttaacggcaacagaattttcagaacgatctttcttctttggacctgtggagatatctgcaatacgaa |
36309585 |
T |
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| Q |
211 |
acctacttccacgtcatctcgacaacgcatcaaccacctttgaagtcctcacatcgtacatttggcgttcccgcacaaaagctttgaaattaagcccaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
36309586 |
acctacttccacgtcatctcgacaacgcatcaaccacctttgaagtcctcacatcgtacatttggcgttcccacacaaaagctttgaaattaaacccaac |
36309685 |
T |
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| Q |
311 |
cgaagaggttcgaatgatgtccatc |
335 |
Q |
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|||||||||||||||||||| |||| |
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| T |
36309686 |
cgaagaggttcgaatgatgtgcatc |
36309710 |
T |
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