View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_33 (Length: 344)

Name: NF10129_low_33
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_33
NF10129_low_33
[»] chr2 (9 HSPs)
chr2 (18-197)||(35234917-35235096)
chr2 (232-314)||(35235173-35235254)
chr2 (235-292)||(25836671-25836727)
chr2 (151-199)||(24007781-24007829)
chr2 (241-292)||(23956222-23956273)
chr2 (260-292)||(736060-736092)
chr2 (266-314)||(29080748-29080796)
chr2 (139-187)||(38010732-38010780)
chr2 (240-292)||(38216095-38216147)
[»] chr5 (17 HSPs)
chr5 (139-223)||(17128254-17128338)
chr5 (139-292)||(24030191-24030342)
chr5 (141-201)||(22201984-22202044)
chr5 (235-292)||(41419572-41419629)
chr5 (240-292)||(43268594-43268646)
chr5 (142-201)||(29922237-29922296)
chr5 (139-201)||(11163317-11163379)
chr5 (139-201)||(14243799-14243861)
chr5 (139-201)||(27981960-27982022)
chr5 (259-293)||(29658012-29658046)
chr5 (178-292)||(41059747-41059860)
chr5 (246-292)||(42852103-42852149)
chr5 (235-292)||(28625551-28625608)
chr5 (235-292)||(29136784-29136841)
chr5 (143-183)||(8550109-8550149)
chr5 (141-193)||(40697119-40697171)
chr5 (141-201)||(42852000-42852060)
[»] chr1 (12 HSPs)
chr1 (235-292)||(37329370-37329427)
chr1 (160-199)||(15235210-15235249)
chr1 (241-292)||(22593365-22593416)
chr1 (139-193)||(14862946-14863000)
chr1 (139-193)||(14868498-14868552)
chr1 (139-197)||(16225485-16225543)
chr1 (139-197)||(18327500-18327558)
chr1 (141-199)||(22088461-22088519)
chr1 (139-193)||(35897538-35897592)
chr1 (235-292)||(15515305-15515362)
chr1 (146-191)||(17348993-17349038)
chr1 (157-201)||(4068109-4068153)
[»] chr4 (16 HSPs)
chr4 (139-204)||(10794954-10795019)
chr4 (141-201)||(23297416-23297476)
chr4 (240-292)||(15184622-15184674)
chr4 (154-201)||(948063-948110)
chr4 (141-204)||(10796364-10796427)
chr4 (240-310)||(23284731-23284801)
chr4 (139-201)||(43415337-43415399)
chr4 (259-292)||(12495602-12495635)
chr4 (146-191)||(14987526-14987571)
chr4 (259-292)||(24101898-24101931)
chr4 (259-292)||(40699455-40699488)
chr4 (146-199)||(43213643-43213696)
chr4 (141-193)||(4331443-4331495)
chr4 (240-292)||(17222905-17222957)
chr4 (141-193)||(17222942-17222994)
chr4 (246-314)||(41071432-41071500)
[»] chr3 (10 HSPs)
chr3 (174-292)||(42956137-42956254)
chr3 (240-292)||(40581034-40581086)
chr3 (246-314)||(52895341-52895409)
chr3 (240-293)||(53217997-53218050)
chr3 (240-292)||(29830597-29830649)
chr3 (139-201)||(29270337-29270399)
chr3 (240-284)||(17752097-17752141)
chr3 (240-284)||(19053417-19053461)
chr3 (240-292)||(37778209-37778261)
chr3 (248-284)||(41601302-41601338)
[»] chr7 (11 HSPs)
chr7 (246-292)||(33204916-33204962)
chr7 (146-201)||(42083465-42083520)
chr7 (139-201)||(14536859-14536920)
chr7 (246-292)||(22032844-22032890)
chr7 (139-201)||(38372534-38372596)
chr7 (174-223)||(1054094-1054143)
chr7 (140-201)||(21249133-21249194)
chr7 (259-292)||(32358704-32358737)
chr7 (240-292)||(25908370-25908422)
chr7 (240-284)||(38372634-38372678)
chr7 (240-292)||(46744029-46744081)
[»] chr8 (5 HSPs)
chr8 (240-292)||(32212973-32213025)
chr8 (241-292)||(16926686-16926737)
chr8 (234-292)||(25333659-25333717)
chr8 (235-292)||(24350477-24350534)
chr8 (139-200)||(32131416-32131477)
[»] scaffold0332 (1 HSPs)
scaffold0332 (246-292)||(14704-14750)
[»] scaffold0057 (1 HSPs)
scaffold0057 (174-204)||(43861-43891)
[»] scaffold0157 (1 HSPs)
scaffold0157 (259-292)||(24842-24875)
[»] chr6 (2 HSPs)
chr6 (235-292)||(10874055-10874112)
chr6 (240-292)||(32165219-32165271)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 35234917 - 35235096
Alignment:
Q  18 gtttgttcggttccatattttagctttagctttgtgttgtttatggtgaaatgttagtggttagttttatataaggaaaagtcgtcagtagcatgggacc 117  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||   |||||||||||||| ||    
T  35234917 gtttgttcggttccatattttagctttatctttgtattgtttatggtgaaatgttagtggttagttttatagaagggaaaaatgtcagtagcatgggtcc 35235016  T
Q  118 caagtttaaacctcttatcgagacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtatta 197  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35235017 caagtttaaacctctaatccggacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtatta 35235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 35235173 - 35235254
Alignment:
Q  232 ccacttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattttatttcctaaacaatttttcat 314  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||    
T  35235173 ccacttacgaagacacaattatcgttggtgagaacttatgaattaacataaaatctta-tttatttaataaacaatttttcat 35235254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 25836727 - 25836671
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| |||||||||||||||||| |||||||||||| || |||||||||| |||||||    
T  25836727 cttatgaagacacaattatcgttagtgagaacttatgaa-taacataaaagcttattt 25836671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 24007781 - 24007829
Alignment:
Q  151 aatttatgcaaaatagcttctataaataaataagtttttatgtattatt 199  Q
    |||||||||||||||| ||  |||||||||||| |||||||||||||||    
T  24007781 aatttatgcaaaatagtttagataaataaataaatttttatgtattatt 24007829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 23956273 - 23956222
Alignment:
Q  241 aagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| |||||| |||||  ||||||||||||||||||||||||| |||||||    
T  23956273 aagatacaattttcgttaatgagaacttataaattaacataaaaacttattt 23956222  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 736060 - 736092
Alignment:
Q  260 tgagaacttataaattaacataaaatcttattt 292  Q
    ||||||||||||||||||||||||| |||||||    
T  736060 tgagaacttataaattaacataaaaacttattt 736092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 29080748 - 29080796
Alignment:
Q  266 cttataaattaacataaaatcttattttatttcctaaacaatttttcat 314  Q
    |||||||||||||||||||||||||||  |||| | ||| |||||||||    
T  29080748 cttataaattaacataaaatcttatttattttcattaactatttttcat 29080796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 38010780 - 38010732
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagttt 187  Q
    ||||||||||||||| ||||||||||||||| |  ||||||| ||||||    
T  38010780 gacttatttttgaatatatgcaaaatagcttatgcaaataaacaagttt 38010732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 38216095 - 38216147
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| |||||||||||| | ||||||||||| |||||||    
T  38216095 gaagatacaattttcgttagtgagaacttatgagttaacataaaagcttattt 38216147  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 17128254 - 17128338
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattcaaaaacatatcaaagttgtttat 223  Q
    |||||||||||||  |||||||||| ||||| |  ||||||||||| |||||||||||||||| |||| ||||||||| ||||||    
T  17128254 gacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaacttatcaaagtagtttat 17128338  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 24030191 - 24030342
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattcaaaaacatatcaaagttgtttatnnnnnnnnccactta 238  Q
    ||||||||||| |  |||| ||||| ||||| |  ||||||||||| |||||||||||||||| || | | ||||||| ||||||         |||||     
T  24030191 gacttatttttaagcttatacaaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaaagtagtttatgaaaaaa--cacttg 24030288  T
Q  239 cgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||| || |||||| ||||| |||||||||||| ||||||||||||| |||||||    
T  24030289 cgaggatacaattttcgttagtgagaacttatgaattaacataaaagcttattt 24030342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 22202044 - 22201984
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||  |||||||||| ||||| | |||||||||||| ||||||||||||||||    
T  22202044 cttatttttgagcttatgcaaaacagcttatgtaaataaataagcttttatgtattattca 22201984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 41419572 - 41419629
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| |||||| ||||| |||||||||||| ||||||||||||| |||||||    
T  41419572 cttatgaagatacaattttcgttagtgagaacttatcaattaacataaaaacttattt 41419629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 43268646 - 43268594
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| | ||| |||||||||||||||||||||||||| |||||||    
T  43268646 gaagatacaatttttgttagtgagaacttataaattaacataaaagcttattt 43268594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 29922296 - 29922237
Alignment:
Q  142 ttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    ||||||||||  |||||||||| || || |  ||||||||||||||||||||||||||||    
T  29922296 ttatttttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattca 29922237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 11163379 - 11163317
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    ||||||||||| |  |||||||||| ||||| | ||||| ||||||||||||||||| |||||    
T  11163379 gacttattttttagcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattca 11163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 14243799 - 14243861
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||  |||||||||| ||||| | |||||||||||| || |||||| ||||||    
T  14243799 gacttatttttgagattatgcaaaacagcttatgtaaataaataagcttctatgtaatattca 14243861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 27982022 - 27981960
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||| |||| ||||| | ||| |  |||||||||| |||||||||||||||||    
T  27982022 gacttatttttgaacttatacaaaacatcttatgaaaataaataaatttttatgtattattca 27981960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 29658046 - 29658012
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttatttt 293  Q
    |||||||||||||||||||||||||| ||||||||    
T  29658046 gtgagaacttataaattaacataaaagcttatttt 29658012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 41059860 - 41059747
Alignment:
Q  178 aaataagtttttatgtattattcaaaaacatatcaaagttgtttatnnnnnnnnccacttacgaagacacaattatcgttggtgagaacttataaattaa 277  Q
    ||||||| |||||||||||||||| || | |||||| |||||||||         | |||| |||||  ||||| ||||| |||||||||||| ||||||    
T  41059860 aaataagcttttatgtattattcataagcttatcaaggttgtttatgaaaaatcac-cttatgaagattcaattttcgttagtgagaacttatgaattaa 41059762  T
Q  278 cataaaatcttattt 292  Q
    ||||||| |||||||    
T  41059761 cataaaagcttattt 41059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 42852103 - 42852149
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||||| ||||| |||||||||||| ||||||||||||| |||||||    
T  42852103 acaattttcgttagtgagaacttatgaattaacataaaagcttattt 42852149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 28625551 - 28625608
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| |||||| ||||| |||||||| ||| ||||||||||||| |||||||    
T  28625551 cttatgaagatacaattttcgttagtgagaacctatgaattaacataaaagcttattt 28625608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 29136841 - 29136784
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| ||||||  |||||||||| |||||| ||||||||||||| |||||||    
T  29136841 cttatgaagatacaatttccgttggtgaggacttatgaattaacataaaagcttattt 29136784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 8550109 - 8550149
Alignment:
Q  143 tatttttgaatttatgcaaaatagcttctataaataaataa 183  Q
    |||||||||| ||||||||||||| || |||||||||||||    
T  8550109 tatttttgaacttatgcaaaatagtttatataaataaataa 8550149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 40697171 - 40697119
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    |||||||||||  ||||| |||||||||| || ||||||||||| ||||||||    
T  40697171 cttatttttgagcttatgaaaaatagcttatacaaataaataagcttttatgt 40697119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 42852000 - 42852060
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    ||||||||||   |||||||||| ||||| |  ||||||||||| ||||||||||||||||    
T  42852000 cttatttttgggcttatgcaaaacagcttattcaaataaataagcttttatgtattattca 42852060  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 37329427 - 37329370
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||    
T  37329427 cttatgaagatacaattttcgttggtgagaacttataaattaacataaaagcttattt 37329370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 15235249 - 15235210
Alignment:
Q  160 aaaatagcttctataaataaataagtttttatgtattatt 199  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  15235249 aaaatagcttatgtaaataaataagtttttatgtattatt 15235210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 22593416 - 22593365
Alignment:
Q  241 aagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| |||||| | ||| |||||||||||||||||||||||||| |||||||    
T  22593416 aagatacaatttttgttagtgagaacttataaattaacataaaagcttattt 22593365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 14863000 - 14862946
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    ||||||||||||| |||||  |||||| | | |||||||||||||||||||||||    
T  14863000 gacttatttttgagtttataaaaaataacatatataaataaataagtttttatgt 14862946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 14868552 - 14868498
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    ||||||||||||| |||||  |||||| | | |||||||||||||||||||||||    
T  14868552 gacttatttttgagtttataaaaaataacatatataaataaataagtttttatgt 14868498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 16225485 - 16225543
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtatta 197  Q
    |||||||||| ||  |||||||||| || || | |||||||||||||||||||||||||    
T  16225485 gacttattttagagcttatgcaaaacagtttatgtaaataaataagtttttatgtatta 16225543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 18327500 - 18327558
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtatta 197  Q
    |||||||||| |||||||| ||||| ||||| |  ||||||||||| ||||||||||||    
T  18327500 gacttattttggaatttattcaaaacagcttatgcaaataaataagcttttatgtatta 18327558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 22088519 - 22088461
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattatt 199  Q
    |||||||| || |||||  |||| ||||| | |||||||||||||||||||||||||||    
T  22088519 cttattttagagtttatataaaacagcttatgtaaataaataagtttttatgtattatt 22088461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 35897538 - 35897592
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    |||||||||||||| ||||| |||||||||| | |||||||||||  ||||||||    
T  35897538 gacttatttttgaacttatgaaaaatagcttatgtaaataaataaacttttatgt 35897592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 15515362 - 15515305
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| |||||| ||||| |||||||||||| ||||||||| ||| |||||||    
T  15515362 cttatgaagatacaattttcgttagtgagaacttatgaattaacatgaaagcttattt 15515305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 17349038 - 17348993
Alignment:
Q  146 ttttgaatttatgcaaaatagcttctataaataaataagtttttat 191  Q
    ||||||| ||||| |||||||||| | |||||||||||||||||||    
T  17349038 ttttgaacttatgaaaaatagcttatgtaaataaataagtttttat 17348993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 4068109 - 4068153
Alignment:
Q  157 tgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    ||||||||||||| |  ||||||||||| ||||||||||||||||    
T  4068109 tgcaaaatagcttgtgcaaataaataagcttttatgtattattca 4068153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 10795019 - 10794954
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattcaaaa 204  Q
    |||||||||| ||  |||||||||| ||||| | ||||||||||||||||||||||||||| ||||    
T  10795019 gacttattttagagcttatgcaaaacagcttgtgtaaataaataagtttttatgtattatttaaaa 10794954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 23297416 - 23297476
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||  |||||||||||||||| |  ||||||||||| ||||||||||||||||    
T  23297416 cttatttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattca 23297476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 15184622 - 15184674
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||    
T  15184622 gaagatacaattttcgttagtgagaacttataaattaaaataaaaacttattt 15184674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 948063 - 948110
Alignment:
Q  154 ttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||||| |  ||||||||||| ||||||||||||||||    
T  948063 ttatgcaaaatagcttatgaaaataaataagcttttatgtattattca 948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 10796364 - 10796427
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattcaaaa 204  Q
    |||||||| ||  |||||||||| | ||| | ||||||||||||||||||||||||||| ||||    
T  10796364 cttattttagagcttatgcaaaacaacttgtgtaaataaataagtttttatgtattatttaaaa 10796427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 23284801 - 23284731
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattttatttcctaaacaatttt 310  Q
    ||||| |||||| ||||| |||||| |||||||||||| |||||| |||||||  || ||||||| |||||    
T  23284801 gaagatacaattttcgttagtgagagcttataaattaaaataaaaacttatttatttacctaaactatttt 23284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 43415399 - 43415337
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||  ||| | |||| | |||||  ||||||||||||||||||||||||||||    
T  43415399 gacttatttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtattattca 43415337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 12495635 - 12495602
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||||||||||||||||| |||||||    
T  12495635 gtgagaacttataaattaacataaaaacttattt 12495602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 14987526 - 14987571
Alignment:
Q  146 ttttgaatttatgcaaaatagcttctataaataaataagtttttat 191  Q
    |||||| |||||| |||| ||||| |||||||||||||||||||||    
T  14987526 ttttgagtttatgaaaaacagcttatataaataaataagtttttat 14987571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 24101931 - 24101898
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||||||||||||||||| |||||||    
T  24101931 gtgagaacttataaattaacataaaaacttattt 24101898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 40699455 - 40699488
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||| |||||||||||||||||||||    
T  40699455 gtgagaacttatgaattaacataaaatcttattt 40699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 43213696 - 43213643
Alignment:
Q  146 ttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattatt 199  Q
    ||||||||||||  ||||||| || || |||||||||| |||||||||||||||    
T  43213696 ttttgaatttatataaaatagtttatacaaataaataattttttatgtattatt 43213643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 4331495 - 4331443
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    ||||| ||||| |||||| |||||| ||| | |||||||||||||||||||||    
T  4331495 cttatctttgagtttatgaaaaataacttatgtaaataaataagtttttatgt 4331443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 17222905 - 17222957
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| || ||||||||| ||||||||||||| |||||||    
T  17222905 gaagatacaattttcgttagttagaacttatgaattaacataaaaacttattt 17222957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 17222994 - 17222942
Alignment:
Q  141 cttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgt 193  Q
    |||||||||||  ||||| |||||||||| |  ||||||||||||||||||||    
T  17222994 cttatttttgagcttatgaaaaatagcttattcaaataaataagtttttatgt 17222942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 41071432 - 41071500
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattttatttcctaaacaatttttcat 314  Q
    |||||| || || |||||||||| ||||||||||||||| |||||||  |||| ||| | |||||||||    
T  41071432 acaattctcattagtgagaacttgtaaattaacataaaagcttatttattttcttaagctatttttcat 41071500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 42956254 - 42956137
Alignment:
Q  174 aaataaataagtttttatgtattattcaaaaacatatcaaagttgtttatnnnnnnnnccacttacgaagacacaattatcgttggtgagaacttataaa 273  Q
    |||||||||||||||||||||||||||| |||| | || |||| ||||||        |  ||||  |||| |||||| ||||| |||||||||||||||    
T  42956254 aaataaataagtttttatgtattattcataaacttgtcgaagtagtttatgataaaa-cagcttataaagatacaattttcgttagtgagaacttataaa 42956156  T
Q  274 ttaacataaaatcttattt 292  Q
    ||||||||||| |||||||    
T  42956155 ttaacataaaaacttattt 42956137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 40581086 - 40581034
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||||||||||||    
T  40581086 gaagaaacaattttcgttagtgagaacttatgaattaacataaaatcttattt 40581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 52895409 - 52895341
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattttatttcctaaacaatttttcat 314  Q
    |||||| ||||| ||||||| |||| ||||||||||||| |||||||  || |||||||||||||||||    
T  52895409 acaattttcgttagtgagaatttatgaattaacataaaagcttatttatttgcctaaacaatttttcat 52895341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 53218050 - 53217997
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttatttt 293  Q
    ||||| |||||| ||||| ||||||||||||||||||| |||||| ||||||||    
T  53218050 gaagatacaattttcgttagtgagaacttataaattaaaataaaagcttatttt 53217997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 29830649 - 29830597
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| ||||||||||||||||||| |||||| |||||||    
T  29830649 gaagatacaattttcgttagtgagaacttataaattaaaataaaaacttattt 29830597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 29270337 - 29270399
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||  |||||||||| | ||| ||  |||||||||| ||||||||||||||||    
T  29270337 gacttatttttgagcttatgcaaaacaacttataggaataaataagcttttatgtattattca 29270399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 17752141 - 17752097
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaa 284  Q
    ||||| |||||| ||||| || |||||||||||||||||||||||    
T  17752141 gaagatacaattttcgttagtaagaacttataaattaacataaaa 17752097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 19053461 - 19053417
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaa 284  Q
    ||||| |||||| ||||| || |||||||||||||||||||||||    
T  19053461 gaagatacaattttcgttagtaagaacttataaattaacataaaa 19053417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 37778209 - 37778261
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| | ||| ||||||||||||||||||| |||||| |||||||    
T  37778209 gaagatacaatttttgttagtgagaacttataaattaaaataaaagcttattt 37778261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 41601338 - 41601302
Alignment:
Q  248 aattatcgttggtgagaacttataaattaacataaaa 284  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  41601338 aattttcgttggtgagaatttataaattaacataaaa 41601302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33204916 - 33204962
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||    
T  33204916 acaattatcgttagtgagaacttatgaattaacataaaagcttattt 33204962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 42083520 - 42083465
Alignment:
Q  146 ttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    ||||||| | ||||| ||| |||| | |||||||||||||||||||||||||||||    
T  42083520 ttttgaactcatgcataatggcttatgtaaataaataagtttttatgtattattca 42083465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 14536859 - 14536920
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||||||||  |||| | ||| || |||||||||| |||||||||||||||||    
T  14536859 gacttatttttgaatttattaaaaacaacttatagaaataaataa-tttttatgtattattca 14536920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 22032844 - 22032890
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||||| ||||| ||||||||||||||||||| |||||| |||||||    
T  22032844 acaattttcgttagtgagaacttataaattaagataaaaacttattt 22032890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38372534 - 38372596
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||||  |||||||||| ||||| |  ||||||||||| | ||||||||||||||    
T  38372534 gacttatttttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattca 38372596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 1054143 - 1054094
Alignment:
Q  174 aaataaataagtttttatgtattattcaaaaacatatcaaagttgtttat 223  Q
    ||||||||||| |||||||||||||||||||| || |||| || ||||||    
T  1054143 aaataaataagcttttatgtattattcaaaaaaatttcaatgtagtttat 1054094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 21249133 - 21249194
Alignment:
Q  140 acttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattca 201  Q
    |||||||||||  |||||||||||   ||| |  ||||||||||||||||||||||||||||    
T  21249133 acttatttttgcgtttatgcaaaactacttatgcaaataaataagtttttatgtattattca 21249194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 32358704 - 32358737
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||||||||||||||||| |||||||    
T  32358704 gtgagaacttataaattaacataaaagcttattt 32358737  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 25908370 - 25908422
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| |||| || |||||||||||||||||| |||||||    
T  25908370 gaagatacaattttcgtttgtgaaaagttataaattaacataaaaacttattt 25908422  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 38372634 - 38372678
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaa 284  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||||    
T  38372634 gaagaaacaattttcgttagtgagaacttatgaattaacataaaa 38372678  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 46744029 - 46744081
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| |||||||||||  ||||||||||||| |||||||    
T  46744029 gaagatacaattttcgttagtgagaacttacgaattaacataaaagcttattt 46744081  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 32213025 - 32212973
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||| || || ||||||||||||||| |||||||||| |||||||    
T  32213025 gaagacacaattttcattagtgagaacttataaaataacataaaagcttattt 32212973  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 16926737 - 16926686
Alignment:
Q  241 aagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||||  |||| |||||||||||||||||||||||||| |||||||    
T  16926737 aagaaacaatttccgttagtgagaacttataaattaacataaaaacttattt 16926686  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 25333717 - 25333659
Alignment:
Q  234 acttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| ||||| |||||| ||||| |||| ||||||| ||||||||||||| |||||||    
T  25333717 acttatgaagatacaattttcgttagtgaaaacttatgaattaacataaaagcttattt 25333659  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 24350534 - 24350477
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| | |||| ||||| || ||||||||| |||||||||||||||||||||    
T  24350534 cttatgaagatataattttcgttagtaagaacttatgaattaacataaaatcttattt 24350477  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 32131416 - 32131477
Alignment:
Q  139 gacttatttttgaatttatgcaaaatagcttctataaataaataagtttttatgtattattc 200  Q
    |||||||||||||  |||||||||| ||||| |  ||||||||||| ||||||| |||||||    
T  32131416 gacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgcattattc 32131477  T

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Target: scaffold0332 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 14750 - 14704
Alignment:
Q  246 acaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||||| ||||| |||||||||||||||||||||| ||| |||||||    
T  14750 acaattttcgttagtgagaacttataaattaacatgaaagcttattt 14704  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 43891 - 43861
Alignment:
Q  174 aaataaataagtttttatgtattattcaaaa 204  Q
    |||||||||||||||||||||||||||||||    
T  43891 aaataaataagtttttatgtattattcaaaa 43861  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 24842 - 24875
Alignment:
Q  259 gtgagaacttataaattaacataaaatcttattt 292  Q
    |||||||||||||||||||||||||| |||||||    
T  24842 gtgagaacttataaattaacataaaaacttattt 24875  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 10874055 - 10874112
Alignment:
Q  235 cttacgaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    |||| ||||| |||||| | |||||||| ||||||| ||||||||||||| |||||||    
T  10874055 cttatgaagatacaattttagttggtgaaaacttatgaattaacataaaagcttattt 10874112  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 32165271 - 32165219
Alignment:
Q  240 gaagacacaattatcgttggtgagaacttataaattaacataaaatcttattt 292  Q
    ||||| |||||| ||||| |||||| |||||||||||| |||||| |||||||    
T  32165271 gaagatacaattttcgttagtgagagcttataaattaaaataaaaacttattt 32165219  T

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