View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_34 (Length: 343)
Name: NF10129_low_34
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 108 - 330
Target Start/End: Original strand, 32653895 - 32654118
Alignment:
| Q |
108 |
ccatgattgagagaagtttagagatggagtcacattacaggcctaagcactcacttaaacatctagttgtgaactcaagcttcaatcgtctagtcatcaa |
207 |
Q |
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| T |
32653895 |
ccatgattgagagaagtttagagatggagtcacattacaggcctaagcactgacttaaacatctagttgtgaactcaagcttcaatcgtctagtcatcaa |
32653994 |
T |
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| Q |
208 |
tgccaaactatctggaccnnnnnnntttcatgagctatggaatgtcgatagcctctc-tcttgaatcgttgatatgtgcttcaacagatcgtttaaagtt |
306 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32653995 |
tgccaaactatctggaccaaatttttttcatgagctatggaatgtcgatagcctctcttcttgaatcgttgatatgtgcttcaacagatcgtttaaagtt |
32654094 |
T |
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| Q |
307 |
gaagctttcaatcatgtcttaata |
330 |
Q |
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|||||||||||||||||||||||| |
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| T |
32654095 |
gaagctttcaatcatgtcttaata |
32654118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 327
Target Start/End: Original strand, 32656832 - 32656993
Alignment:
| Q |
167 |
catctagttgtgaactcaagcttcaatcgtctagtcatcaatgccaaactatctggaccnnnnnnntttcatgagctatggaatgtcgatagcctctct- |
265 |
Q |
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||||||||||||||||||||||| |||||| | |||||||||||||||| ||||| ||| || ||| || |||||||||||||| ||||||| |
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| T |
32656832 |
catctagttgtgaactcaagcttgaatcgtttggtcatcaatgccaaaccatctgaaccaaattttttccataagttatggaatgtcgatgacctctctt |
32656931 |
T |
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| Q |
266 |
cttgaatcgttgatatgtgcttcaacagatcgtttaaagttgaagctttcaatcatgtctta |
327 |
Q |
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| T |
32656932 |
cttgcatcgttgatttgtgcttcaactgatcgtttaaagttgaaactttcaaccatttctta |
32656993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 32648738 - 32648796
Alignment:
| Q |
167 |
catctagttgtgaactcaagcttcaatcgtctagtcatcaatgccaaactatctggacc |
225 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
32648738 |
catctagttgtgaactcaagcttgaatcgtctagtcatcagtgccaaactatctggacc |
32648796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 32657918 - 32657980
Alignment:
| Q |
164 |
aaacatctagttg-tgaactcaagcttcaatcgtctagtcatcaatgccaaactatctggacc |
225 |
Q |
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|||||| |||||| ||||||||||||| |||| || || ||||||||||||||||| |||||| |
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| T |
32657918 |
aaacatatagttgatgaactcaagcttgaatcatcgagccatcaatgccaaactatatggacc |
32657980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 32656420 - 32656449
Alignment:
| Q |
17 |
aagaccactatagtatacaacaagcacatt |
46 |
Q |
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| T |
32656420 |
aagaccactatagtatacaacaagcacatt |
32656449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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