View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_36 (Length: 340)
Name: NF10129_low_36
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 43759641 - 43759941
Alignment:
| Q |
18 |
atatgtaacgcccattagtcattaatgccacttaaaaactaagctaggaagaatatctaccnnnnnnnnnnnnnnnncgctctcagatttttaattatat |
117 |
Q |
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| T |
43759641 |
atatgtaacgcccattagtcattaatgccacttaaaaactaagctaggaagaatatctacctgtgtgtgtgtgt----gctctcagatttttaattatat |
43759736 |
T |
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| Q |
118 |
cattaccacattttaattcgcgtcacgctctattatttattacttacgcttgacgcgtacgggcaaattattctttatatagaaaatattttaaataaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759737 |
cattaccacattttaattcgcgtcacgctctattattta---cttacgcttgacgcgtacgggcaaattattctttatatagaaaatattttaaataaat |
43759833 |
T |
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| Q |
218 |
tatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtgccactgattatgattaaaaattaatgacaccgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759834 |
tatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtgccactgattatgattaaaaattaatgacaccgaa |
43759933 |
T |
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| Q |
318 |
attgtctc |
325 |
Q |
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|||||||| |
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| T |
43759934 |
attgtctc |
43759941 |
T |
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