View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_37 (Length: 336)

Name: NF10129_low_37
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_37
NF10129_low_37
[»] chr3 (1 HSPs)
chr3 (24-321)||(27177783-27178078)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 27177783 - 27178078
Alignment:
Q  24 aaccccactatatgctgccattgcaccaccatcactttcatcagtagttatattcacgttcctcccatgcagaagaatgtttcttttcctaaacaagtat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  27177783 aaccccactatatgctgccattgcaccaccatcactttcatcagtagttat--tcacgttcctcccatgcagaagaatgtttgttttcctaaacaagtat 27177880  T
Q  124 actgttttcttttactatctatgaccctacacgccactcttgtttcatatttatgtataatacttgcaggacaaacttacaccagcttgcatatgttgtc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27177881 actgttttcttttactatctatgaccctacacgccactcttgtttcatatttatgtataatacttgcaggacaaacttacaccagcttgcatatgttgtc 27177980  T
Q  224 tttttctctgttatccacttcgaatgtggcaaatcaaacttcatttctcgtgaatgaatcaatttactgttttcattcttctagttcgtttccctttg 321  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  27177981 tttttctctgatatccacttcgaatgtggcaaatcaaacttcatttctcgtgaatgaattaacttactgttttcattcttctagttcgtttccctttg 27178078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University