View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_38 (Length: 332)
Name: NF10129_low_38
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 25379028 - 25378734
Alignment:
| Q |
19 |
aaattcatcatcaccacttatatctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccc |
118 |
Q |
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| T |
25379028 |
aaattcatcatcaccacttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccc |
25378929 |
T |
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| Q |
119 |
tactccaagaaaccctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378928 |
tactccaagaaaccctcttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttc |
25378829 |
T |
|
| Q |
219 |
attccaatccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttcgacacctatgatgaattaccttaattctgac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25378828 |
attccaatccttccaattaccctaagccaaattcacaaaacaacatgtacttgagtacttcttccacacctatgatgaattaccttaattctgac |
25378734 |
T |
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