View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_40 (Length: 325)
Name: NF10129_low_40
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 5194516 - 5194217
Alignment:
| Q |
15 |
aaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5194516 |
aaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
5194417 |
T |
|
| Q |
115 |
tatatttctttttaataaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaactcgttgtaa |
214 |
Q |
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| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
5194416 |
tttatttctttttaataaatgataataaaatcattcgtcataatataagaattgaagatgtttacctaaagtggagagagaacaattgaagttgttgtaa |
5194317 |
T |
|
| Q |
215 |
ctcagaatcaaactccttaatgatatgaatccatgcaaacttgatatgatgttgcagtttagccaatttcccgaaaggtctaagacttccaactcctttg |
314 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
5194316 |
ctcagaatcaaactccttaatgatgtgaatccatgcaaacttgttattatgttgcaatttagcctatttcctgaaaggtctaagacttccaactcctttg |
5194217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 5155291 - 5154993
Alignment:
| Q |
15 |
aaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
114 |
Q |
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||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
5155291 |
aaaagtaccttcaacatgtagtgaaccaatcaattgattaccatccaagtccaatagttctagccgattaaatttagcaaaatctgttgaaaggacataa |
5155192 |
T |
|
| Q |
115 |
tatatttctttttaataaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaactcgttgtaa |
214 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5155191 |
tatagttctttttaa-aaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaagttgttgtat |
5155093 |
T |
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| Q |
215 |
ctcagaatcaaactccttaatgatatgaatccatgcaaacttgatatgatgttgcagtttagccaatttcccgaaaggtctaagacttccaactcctttg |
314 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||||| ||||||||||||| |
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| T |
5155092 |
ctcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattgcagttcagcccattataggaaaggtctaagacctccaactcctttg |
5154993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 5181315 - 5181020
Alignment:
| Q |
19 |
gtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataatata |
118 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5181315 |
gtaccttccacatgtagagaaccaccaaatccattgatactcaagtccaatagttctagccgactaaatttggcaaaatctgtagcaaggacataatata |
5181216 |
T |
|
| Q |
119 |
tttctttttaataaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaactcgttgtaactca |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| | ||| | |
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| T |
5181215 |
gttctttttaaaaaatgaaaataaaaacattcatcataatataagaattgaagatgtgtaccgaaagtggagaaagaacaattgaacttgttatcactta |
5181116 |
T |
|
| Q |
219 |
gaatcaaactccttaatgatatgaatccatgcaaacttgatatgatgttgcagtttagccaatttcccgaaaggtctaagacttccaactcctttg |
314 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||| |
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| T |
5181115 |
gaatcaaactccttaatgatgtgaatccatgcaaacttgatatgatgttgcaattcagcctatttcctgaaaggtctaagacttccaactcctttg |
5181020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 4843791 - 4844088
Alignment:
| Q |
15 |
aaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
114 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4843791 |
aaaagtaccttcaacatgtagtgaaccaataaattgattaccacccaagtccaatagttctagctgactaaatttggcaaaatctgttgcaaggacataa |
4843890 |
T |
|
| Q |
115 |
tatatttctttttaataaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaactcgttgtaa |
214 |
Q |
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||| ||| |||||| |||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | | |
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| T |
4843891 |
tattttttttttta--aaatgaaactaaaaacatttgccataatataataattgaagatgcgtacctaaagtggagagagaacaattgaactcgttatca |
4843988 |
T |
|
| Q |
215 |
ctcagaatcaaactccttaatgatatgaatccatgcaaacttgatatgatgttgcagtttagccaatttcccgaaaggtctaagacttccaactcctttg |
314 |
Q |
| |
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| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
4843989 |
tttagaatcaaactccttaatgatatgaaaccatgcaaacttgttatgatattgcagtttagctcattataggaaaggtctaagacctccaactcctttg |
4844088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 5171883 - 5171587
Alignment:
| Q |
15 |
aaaagtaccttcaacatgtagagaaccagtaaattgattaccacccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
114 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5171883 |
aaaagtaccttcaacatgtagtgaaccaataaattgattaccatccaagtccaatagttctagccgactaaatttggcaaaatctgttgcaaggacataa |
5171784 |
T |
|
| Q |
115 |
tatatttctttttaataaatgaaaataaaaacattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaactcgttgtaa |
214 |
Q |
| |
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|| ||| |||| ||||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
5171783 |
tacttttttttt---taaatgaaactaaaaacatttgccataatatattatttgaagatgcgtacctaaagtggagagagaacaattgaacttgttatct |
5171687 |
T |
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| Q |
215 |
ctcagaatcaaactccttaatgatatgaatccatgcaaacttgatatgatgttgcagtttagccaatttcccgaaaggtctaagacttccaactcctttg |
314 |
Q |
| |
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|||| |||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
5171686 |
ctcaaaatcaaactccttaatgatatgaaaccatacaaacttgttatgatattgcagtttagctcattatgggaaaggtctaagacctccaactcctttg |
5171587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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