View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_42 (Length: 311)
Name: NF10129_low_42
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 27039379 - 27039100
Alignment:
| Q |
11 |
cataggttaacgaaaacgatagtatcatcatcaacttgtaaaattcaaatatttgaatctgtttcaacagggacaaatttggaacgcaggtaaggggaac |
110 |
Q |
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| T |
27039379 |
cataggttaacgaaaacgatagtatcatca---acttgtaaaattcaaatatttgaatctgtttcaacggggacaaatttggaacgcaggtaaggtggac |
27039283 |
T |
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| Q |
111 |
tgcgcaaaccaatgtagaccataaaataaaatttagaacttggtcgagcttttccattcacacaagagggtcaagacaaatatgattaggattttagaca |
210 |
Q |
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| T |
27039282 |
tgcgcaaaccaatgtagaccataaaataaaatttagaacttggtcgagcttttccattcacacaagagggtcaagacaaatatgattaggattttagaca |
27039183 |
T |
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| Q |
211 |
tcaatcattattatggtttgtgactcgtattacaccatatattctatgtctacttccttgattttgttttctttatgcaaattat |
295 |
Q |
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| T |
27039182 |
tcaatcattattatggtttgtgactcatattacacc--atattctatgtctacttccttgattttgttttctttatgcaaattat |
27039100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 27040733 - 27040690
Alignment:
| Q |
132 |
taaaataaaatttagaacttggtcgagcttttccattcacacaa |
175 |
Q |
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| T |
27040733 |
taaaacaaaatttagaacttggacgagcttttccattcccacaa |
27040690 |
T |
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