View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_43 (Length: 309)

Name: NF10129_low_43
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_43
NF10129_low_43
[»] chr2 (1 HSPs)
chr2 (16-301)||(33893192-33893483)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 33893192 - 33893483
Alignment:
Q  16 aaaaacaccaatgttcaattgtctaatgatattaaagttgaaaatatcgctctttggcatgttaattttgtacctaggggctaggattctcaccaagaag 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33893192 aaaaacaccaatgttcaattgtctaaagatattaaagttgaaaatatcgctctttggcatgttaattttgtacctaggggctaggattctcaccaagaag 33893291  T
Q  116 ctgcttgaatcatggatagattacagtcgtaattgattgcacaaataatcatggaaaaaaggagtgtaagattgcaaggtcctggtcaag------ggct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  33893292 ctgcttgaatcatggatagattacagtcgtaattgattgcacaaataatcatggaaaaaaggagtgtaagattgcaaggtcctggtcaagggctttggct 33893391  T
Q  210 ttggctttgagaaaattagttcagaacaagactgacgacaaactctaaaatttctatggatgtcaaggacagttcttccgatacttcttctc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  33893392 ttggctttgagaaaattagttcagaacaagactgacgacaaactctaaaatttctatggatggcaaggacagttgttccgatacttcatctc 33893483  T

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