View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_low_46 (Length: 301)
Name: NF10129_low_46
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_46 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 15722075 - 15722285
Alignment:
| Q |
83 |
aaaaatttacaaggtttgtttatataatatataggttttatatccaagaggctctcatttaaagaaacataagatattttataatggtattataaaacta |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15722075 |
aaaaatttacaaggtttgtttatataatatataggttttatatccaagaggctctcatttaaagaaacataagatattttataatggtattataaaacta |
15722174 |
T |
|
| Q |
183 |
tttctaggaatagttggattattacacacatatttttcatttaaattcaatatg-----ttgataagatatgatcagcaaaactcacatgtaatagaaga |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15722175 |
tttctaggaatagttggattattacacacatatttttcatttaaattcaatatgttgaattgataagatatgatcagcaaaactcacatgtaatagaaga |
15722274 |
T |
|
| Q |
278 |
ctttgcctatg |
288 |
Q |
| |
|
||||||||||| |
|
|
| T |
15722275 |
ctttgcctatg |
15722285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 15721989 - 15722052
Alignment:
| Q |
21 |
ttagacacttgaattggaacattttgtcagaaaatctaaaaatccatttaagttatcaccacaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15721989 |
ttagacacttgaattggaacattttgtcagaaaatctaaaaatccatttaagttatcaccacaa |
15722052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 15697011 - 15697064
Alignment:
| Q |
235 |
tgttgataagatatgatcagcaaaactcacatgtaatagaagactttgcctatg |
288 |
Q |
| |
|
||||||| | || |||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
15697011 |
tgttgatgaaatgtgattagccaaactcacatataatagaagactttgcctatg |
15697064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University