View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_47 (Length: 300)
Name: NF10129_low_47
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 29341618 - 29341910
Alignment:
| Q |
1 |
cacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341618 |
cacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacg |
29341717 |
T |
|
| Q |
101 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341718 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
29341817 |
T |
|
| Q |
201 |
actttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttg |
293 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341818 |
actttactcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttg |
29341910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 29357645 - 29357937
Alignment:
| Q |
1 |
cacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacg |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357645 |
cacaggtagccgtagtgggcatgctccaatctttctttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacg |
29357744 |
T |
|
| Q |
101 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357745 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
29357844 |
T |
|
| Q |
201 |
actttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttg |
293 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357845 |
actttactcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttg |
29357937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 44660165 - 44659884
Alignment:
| Q |
1 |
cacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| | |
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| T |
44660165 |
cacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatg |
44660066 |
T |
|
| Q |
101 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
200 |
Q |
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|| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||| | ||||||| |
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| T |
44660065 |
aaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgtgtttgagagacccctggatgatc |
44659966 |
T |
|
| Q |
201 |
actttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgct |
282 |
Q |
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|||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
44659965 |
actttactcgtagatggaatttggcaagcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttgaaatgct |
44659884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 44683310 - 44683053
Alignment:
| Q |
1 |
cacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| | |
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| T |
44683310 |
cacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatg |
44683211 |
T |
|
| Q |
101 |
aatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatc |
200 |
Q |
| |
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|| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| | |||||| |
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| T |
44683210 |
aaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatg |
44683111 |
T |
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| Q |
201 |
actttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgtt |
258 |
Q |
| |
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|||| |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||||| |
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| T |
44683110 |
acttcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgtt |
44683053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 44640321 - 44640141
Alignment:
| Q |
5 |
ggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgagaatgaagtacatgaatgcataacgaatg |
104 |
Q |
| |
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||||| || ||||| |||||||||||||| |||||||||||| | | ||| | ||||||||| | |||||||| ||| ||||||| | ||||| |
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| T |
44640321 |
ggtagtcgaagtggtcatgctccaatctttctttggtatgctttgcaaaaaagaggtatcataggactccaaaatgaagtgcataaatgcatgatgaatg |
44640222 |
T |
|
| Q |
105 |
cacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgaga |
185 |
Q |
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|||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| |||||||||||||| |
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| T |
44640221 |
cacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgaga |
44640141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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