View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_5 (Length: 557)
Name: NF10129_low_5
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 42198656 - 42198128
Alignment:
| Q |
18 |
atgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42198656 |
atgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaaaggttcgattcctc |
42198557 |
T |
|
| Q |
118 |
ctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaa----gcggattgaaaatac |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42198556 |
ctgagttaaaaatggagcatctagagaccatggttatttcgaacaactggttgtcagggaacattcctaaattagaagtaattaagcggattgaaaatac |
42198457 |
T |
|
| Q |
214 |
ttgtgatggctagaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctat-catcaaacaatctcactg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42198456 |
ttgtgatggctagaaacaaatttagtggctcaattccaaatagtctaggggatttagcatcacttgtgactttggatctattcatcaaacaatctcactg |
42198357 |
T |
|
| Q |
313 |
gtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttat |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198356 |
gtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttat |
42198257 |
T |
|
| Q |
413 |
gaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42198256 |
gaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatc-----aagttatgcacaagttgggagtaactttgtatgttgcag |
42198162 |
T |
|
| Q |
513 |
gtaaaaaacacaagagaaacattttactccctat |
546 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
42198161 |
gtaaaaaacacaagagaaacattttactccctat |
42198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 42211227 - 42210704
Alignment:
| Q |
18 |
atgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctc |
117 |
Q |
| |
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|||||||| |||| ||||| |||||| ||||||||||||||| || || ||||||||| || |||| || ||||| ||| |||| |||||| |||||| |
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| T |
42211227 |
atgaataagcttgctggtgtcatacccatggagatttttcaactctctggcttgacaactttatacttacatggaaattctctgaacggttcgcttcctc |
42211128 |
T |
|
| Q |
118 |
ctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgt |
217 |
Q |
| |
|
|| | || ||||||||||| |||||| |||||||| ||||| ||| | |||||||||||||||||||| | ||||| | ||||||||||| |||| | |
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| T |
42211127 |
ctcaattcaaaatggagcagctagaggccatggttgtttcggacaacaagctgtcagggaacattcctaaaatcgaagttaacggattgaaaacacttat |
42211028 |
T |
|
| Q |
218 |
gatggctagaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctatcatcaaacaatctcactggtcta |
317 |
Q |
| |
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|||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| | |
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| T |
42211027 |
gatggcaagaaacaattttagtggctcaattccaaatagtctaggggatttgccatcccttgtgactttagatctatcatcaaacagtctcactggtcca |
42210928 |
T |
|
| Q |
318 |
attcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacc |
417 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||||| |||||||||||| |||||| | |||||||| || |||||||| ||||| |||||||||||| |
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|
| T |
42210927 |
atccctgagagtttagaaaagctcaagtatatggtgaaattaaatttgtccttcaacaaattggaaggggaagttcctatggaaggtatttttatgaacc |
42210828 |
T |
|
| Q |
418 |
taagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaa |
517 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
42210827 |
taagccaggttgatctccaaggtaacaacaaactatgtggccttaacaatc-----aagttatgcacaagttaggagtcactttgtgtgttgcaggtaag |
42210733 |
T |
|
| Q |
518 |
aaacacaagagaaacattttactccctat |
546 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |
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|
| T |
42210732 |
aaaaacaagagaaacattttactacctat |
42210704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 42223443 - 42222989
Alignment:
| Q |
18 |
atgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgattcctc |
117 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| || | ||||||||| || |||| || ||||| ||| ||||||||||| |||||| |
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| T |
42223443 |
atgaataagcttgttggtgtcataccaatggagatttttcaactctctagcttgacaactttatacttacatggaaattctctgaatggttcgcttcctc |
42223344 |
T |
|
| Q |
118 |
ctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacattcctaaattagaagtaagcggattgaaaatacttgt |
217 |
Q |
| |
|
|| ||| || |||||||| |||| | |||||||| |||| ||| | |||||||||||||||||||| | ||||| ||||||||||| ||| || |
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|
| T |
42223343 |
cttcgttcaagatggagcagctagtggccatggttgtttcagacaacatgctgtcagggaacattcctaaaatcgaagttgacggattgaaaacactagt |
42223244 |
T |
|
| Q |
218 |
gatggctagaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctatcatcaaacaatctcactggtcta |
317 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |
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|
| T |
42223243 |
gatggcaagaaacaattttagtggctcaattccaaatagtctaggtgatttagcatcccttgtgactttagatctatcatcaaacaatctcactggttca |
42223144 |
T |
|
| Q |
318 |
attcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacc |
417 |
Q |
| |
|
||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || |||||||| |||| ||||||||||||| |
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|
| T |
42223143 |
attcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagttcctatggaaggcgtttttatgaacc |
42223044 |
T |
|
| Q |
418 |
taagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagt |
472 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
42223043 |
taagccaggttgatatccaaggtaacaacaaactatgtggccttaacaatgaagt |
42222989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 293 - 546
Target Start/End: Original strand, 33700929 - 33701177
Alignment:
| Q |
293 |
atcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacatt |
392 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || || |
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|
| T |
33700929 |
atcatcaaacaatctcactggtccaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagtt |
33701028 |
T |
|
| Q |
393 |
cctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggg |
492 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |||||||| || |
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|
| T |
33701029 |
cctatggaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgtggcgttaacaa-----tgaagttacccacaagttagg |
33701123 |
T |
|
| Q |
493 |
agtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
546 |
Q |
| |
|
||| ||||||| ||||||| ||| ||| |||| | |||||||||||| ||||| |
|
|
| T |
33701124 |
agtcactttgtgtgttgcatctaagaaaaacaaaacaaacattttactacctat |
33701177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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