View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_50 (Length: 291)
Name: NF10129_low_50
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 36675826 - 36676105
Alignment:
| Q |
1 |
tatgtgggggagacatattatacatatatttgaccaataacaggcttannnnnnnattatcaggagagcattacaactttttatcacaatgttactgaga |
100 |
Q |
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| T |
36675826 |
tatgtgggggagacatattatacatatatttgaccaataacaggcttatttttt-attatcaggagagcattacaactttttatcacaatgttactgaga |
36675924 |
T |
|
| Q |
101 |
ctaacattacttttttccgacataaacccgatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgg |
200 |
Q |
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| T |
36675925 |
ctaacattacttttttcagacataaacccgatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgt |
36676024 |
T |
|
| Q |
201 |
gtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcctttg |
281 |
Q |
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| T |
36676025 |
gtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcctttg |
36676105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 130 - 281
Target Start/End: Original strand, 36673200 - 36673350
Alignment:
| Q |
130 |
gatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgggtcagaatcatcaccagaaccatttggtc |
229 |
Q |
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||||| |||||||||| ||| ||||||||||| |||| ||| |||| |||||||||||||||||||||| |||||||| || | |||| | |||| ||| |
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| T |
36673200 |
gatcttattatttaaa-ctcaacaatttcgtctatagtaattgaagtagcatattctaatccccttaatctgtcagaattattaacagagctattttgtc |
36673298 |
T |
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| Q |
230 |
ccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcctttg |
281 |
Q |
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| T |
36673299 |
ccttccttacattgctcatattgttgtaaacttcaagcattgttggcctttg |
36673350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 36695531 - 36695634
Alignment:
| Q |
178 |
gcatattctaatccccttaatgggtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcc |
277 |
Q |
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|||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||||||||||||||||||||||||| || |
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| T |
36695531 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttggtggcttcctgtcattgctcatattgttgtaaacttcaagcattgttgacc |
36695630 |
T |
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| Q |
278 |
tttg |
281 |
Q |
| |
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|||| |
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| T |
36695631 |
tttg |
36695634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 36683744 - 36683781
Alignment:
| Q |
244 |
ctcatattgttgtaaacttcaagcattgttggcctttg |
281 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |
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| T |
36683744 |
ctcaaattgttgtaaacttcaagcattgttggtctttg |
36683781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36673029 - 36673069
Alignment:
| Q |
2 |
atgtgggggagacatattatacatatatttgaccaataaca |
42 |
Q |
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|||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
36673029 |
atgttggggagatatattatacatatatttgagcaataaca |
36673069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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