View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_53 (Length: 282)

Name: NF10129_low_53
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_53
NF10129_low_53
[»] chr2 (35 HSPs)
chr2 (1-175)||(3381487-3381661)
chr2 (203-275)||(9058520-9058592)
chr2 (199-275)||(10249370-10249446)
chr2 (203-275)||(19930808-19930880)
chr2 (203-275)||(13438383-13438455)
chr2 (199-275)||(32505636-32505712)
chr2 (203-275)||(17473060-17473132)
chr2 (203-275)||(28863495-28863567)
chr2 (199-273)||(40701514-40701588)
chr2 (199-273)||(4060721-4060795)
chr2 (203-273)||(7465725-7465795)
chr2 (199-273)||(28381645-28381719)
chr2 (203-273)||(33436090-33436160)
chr2 (203-272)||(5574479-5574548)
chr2 (203-267)||(27864744-27864808)
chr2 (203-275)||(40613890-40613962)
chr2 (213-275)||(20700865-20700927)
chr2 (211-273)||(30915511-30915573)
chr2 (203-272)||(38882802-38882874)
chr2 (211-275)||(38273130-38273194)
chr2 (203-275)||(42257233-42257305)
chr2 (206-275)||(3737986-3738055)
chr2 (204-267)||(38732395-38732458)
chr2 (211-275)||(2533171-2533235)
chr2 (211-275)||(36168884-36168948)
chr2 (204-267)||(2997483-2997546)
chr2 (203-267)||(41575177-41575242)
chr2 (199-267)||(33436247-33436315)
chr2 (204-267)||(13365394-13365457)
chr2 (204-267)||(43490162-43490225)
chr2 (204-267)||(45097731-45097794)
chr2 (213-267)||(3034979-3035033)
chr2 (206-272)||(26891495-26891561)
chr2 (206-275)||(3440022-3440091)
chr2 (204-267)||(17820000-17820063)
[»] scaffold0642 (1 HSPs)
scaffold0642 (5-175)||(7272-7443)
[»] scaffold0345 (1 HSPs)
scaffold0345 (5-175)||(17185-17356)
[»] scaffold0105 (1 HSPs)
scaffold0105 (5-175)||(21626-21797)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-175)||(50495-50670)
[»] chr8 (29 HSPs)
chr8 (1-175)||(44498898-44499073)
chr8 (203-275)||(40423931-40424003)
chr8 (203-275)||(12831087-12831159)
chr8 (203-275)||(14547962-14548034)
chr8 (203-275)||(15197373-15197445)
chr8 (199-275)||(23122585-23122661)
chr8 (199-273)||(504111-504185)
chr8 (203-275)||(1179928-1180000)
chr8 (203-275)||(8841420-8841492)
chr8 (203-275)||(34012284-34012356)
chr8 (203-275)||(5957870-5957942)
chr8 (211-275)||(9122233-9122297)
chr8 (203-267)||(10284627-10284691)
chr8 (203-275)||(37038519-37038591)
chr8 (211-273)||(44507077-44507139)
chr8 (203-275)||(10621075-10621147)
chr8 (203-275)||(43414569-43414641)
chr8 (211-268)||(15048177-15048234)
chr8 (206-275)||(15258917-15258986)
chr8 (206-267)||(42221558-42221619)
chr8 (204-267)||(16056397-16056460)
chr8 (204-267)||(16383418-16383481)
chr8 (212-267)||(17443874-17443929)
chr8 (204-267)||(24307789-24307852)
chr8 (204-267)||(32032765-32032828)
chr8 (204-267)||(34307257-34307320)
chr8 (239-275)||(4854851-4854887)
chr8 (203-267)||(30479470-30479534)
chr8 (204-246)||(14055609-14055651)
[»] chr4 (33 HSPs)
chr4 (199-275)||(41236383-41236459)
chr4 (203-275)||(48183037-48183109)
chr4 (203-275)||(480435-480507)
chr4 (211-275)||(42044355-42044419)
chr4 (203-275)||(50052416-50052488)
chr4 (203-272)||(11511453-11511522)
chr4 (214-275)||(29234233-29234294)
chr4 (203-275)||(6034084-6034156)
chr4 (203-275)||(29239926-29239998)
chr4 (203-275)||(54473521-54473593)
chr4 (211-273)||(41823930-41823992)
chr4 (203-275)||(24995095-24995167)
chr4 (203-273)||(31910232-31910302)
chr4 (213-275)||(53352554-53352616)
chr4 (203-267)||(3481694-3481758)
chr4 (203-275)||(23608275-23608347)
chr4 (211-267)||(29977933-29977989)
chr4 (204-267)||(47986249-47986312)
chr4 (212-264)||(28480267-28480319)
chr4 (212-264)||(28481142-28481194)
chr4 (212-264)||(28482017-28482069)
chr4 (203-275)||(50526159-50526231)
chr4 (203-275)||(56300153-56300225)
chr4 (204-267)||(17983739-17983802)
chr4 (204-267)||(50813888-50813951)
chr4 (203-275)||(40574819-40574891)
chr4 (211-275)||(48647714-48647778)
chr4 (212-267)||(19670712-19670767)
chr4 (204-267)||(44536742-44536805)
chr4 (203-267)||(55475231-55475295)
chr4 (204-267)||(29589736-29589799)
chr4 (204-267)||(32766999-32767062)
chr4 (211-277)||(18769157-18769223)
[»] chr3 (33 HSPs)
chr3 (203-275)||(31456729-31456801)
chr3 (203-275)||(33644240-33644312)
chr3 (203-275)||(53982051-53982123)
chr3 (203-272)||(27714882-27714951)
chr3 (199-273)||(17470441-17470515)
chr3 (203-273)||(52629340-52629410)
chr3 (199-273)||(54868885-54868959)
chr3 (203-275)||(8076433-8076505)
chr3 (203-275)||(49607454-49607526)
chr3 (199-275)||(47531901-47531977)
chr3 (203-275)||(11347910-11347982)
chr3 (211-275)||(26141520-26141584)
chr3 (212-275)||(11907420-11907483)
chr3 (203-273)||(48587081-48587151)
chr3 (206-275)||(26754738-26754807)
chr3 (203-275)||(9563039-9563111)
chr3 (203-275)||(41189752-41189824)
chr3 (211-275)||(51419348-51419412)
chr3 (203-275)||(36707416-36707484)
chr3 (203-272)||(11095346-11095413)
chr3 (211-273)||(20764905-20764967)
chr3 (203-275)||(33118839-33118911)
chr3 (204-267)||(13898051-13898114)
chr3 (204-267)||(36331325-36331388)
chr3 (211-273)||(30801723-30801785)
chr3 (199-275)||(24699942-24700018)
chr3 (204-267)||(14623835-14623898)
chr3 (203-266)||(35093625-35093688)
chr3 (209-275)||(48375694-48375760)
chr3 (203-267)||(35536666-35536730)
chr3 (204-275)||(39670052-39670123)
chr3 (203-267)||(8956802-8956866)
chr3 (203-267)||(41080748-41080811)
[»] chr7 (34 HSPs)
chr7 (199-275)||(3694403-3694479)
chr7 (203-275)||(7389429-7389501)
chr7 (199-275)||(19329878-19329954)
chr7 (203-275)||(38267080-38267152)
chr7 (201-275)||(3784033-3784107)
chr7 (207-275)||(32951481-32951549)
chr7 (1-170)||(30110572-30110736)
chr7 (213-275)||(38837267-38837329)
chr7 (199-272)||(19436178-19436251)
chr7 (203-272)||(36361904-36361973)
chr7 (203-272)||(36362066-36362135)
chr7 (199-275)||(4999502-4999578)
chr7 (203-275)||(8080371-8080443)
chr7 (203-275)||(35137573-35137645)
chr7 (203-273)||(3434602-3434672)
chr7 (211-273)||(40957755-40957817)
chr7 (203-267)||(8238253-8238317)
chr7 (204-267)||(38044238-38044301)
chr7 (211-273)||(35522924-35522986)
chr7 (207-275)||(26296688-26296756)
chr7 (204-267)||(16374820-16374883)
chr7 (204-275)||(36208214-36208285)
chr7 (204-267)||(40846109-40846172)
chr7 (223-273)||(11044238-11044288)
chr7 (199-263)||(7727942-7728006)
chr7 (204-267)||(22343402-22343465)
chr7 (204-267)||(41915782-41915845)
chr7 (203-277)||(21234441-21234515)
chr7 (239-275)||(31735953-31735989)
chr7 (211-275)||(46033789-46033853)
chr7 (204-267)||(32564422-32564485)
chr7 (211-257)||(46374808-46374854)
chr7 (199-267)||(2318239-2318307)
chr7 (199-267)||(18207216-18207283)
[»] chr6 (20 HSPs)
chr6 (203-275)||(32869718-32869790)
chr6 (201-275)||(17598592-17598666)
chr6 (203-275)||(11427658-11427730)
chr6 (203-275)||(22880646-22880718)
chr6 (203-275)||(23128115-23128187)
chr6 (203-275)||(31109388-31109460)
chr6 (203-275)||(6209453-6209525)
chr6 (199-272)||(29857863-29857936)
chr6 (211-275)||(31976296-31976360)
chr6 (204-268)||(28536483-28536545)
chr6 (211-267)||(4231596-4231652)
chr6 (204-267)||(15508020-15508083)
chr6 (204-267)||(15990038-15990101)
chr6 (204-267)||(30341356-30341419)
chr6 (214-272)||(31110752-31110810)
chr6 (203-275)||(15832617-15832689)
chr6 (203-275)||(946416-946488)
chr6 (204-267)||(12732523-12732586)
chr6 (204-267)||(31953026-31953089)
chr6 (217-275)||(30870068-30870126)
[»] chr5 (28 HSPs)
chr5 (207-275)||(40145451-40145519)
chr5 (203-275)||(13811692-13811764)
chr5 (203-275)||(18520872-18520944)
chr5 (203-275)||(36732930-36733002)
chr5 (203-275)||(42414290-42414362)
chr5 (203-274)||(2740314-2740385)
chr5 (203-275)||(33149626-33149698)
chr5 (199-273)||(35785235-35785309)
chr5 (199-275)||(6679734-6679810)
chr5 (203-275)||(15409598-15409670)
chr5 (203-275)||(28177815-28177887)
chr5 (203-275)||(14831854-14831926)
chr5 (209-273)||(31132390-31132454)
chr5 (203-275)||(35943880-35943952)
chr5 (211-272)||(31009036-31009097)
chr5 (204-267)||(2252164-2252227)
chr5 (204-267)||(3921261-3921324)
chr5 (207-275)||(39557505-39557573)
chr5 (217-272)||(26720570-26720625)
chr5 (217-272)||(26990319-26990374)
chr5 (211-273)||(21370052-21370114)
chr5 (217-254)||(41470425-41470462)
chr5 (204-268)||(33825319-33825383)
chr5 (231-275)||(36875600-36875644)
chr5 (204-267)||(16327942-16328005)
chr5 (212-267)||(25831334-25831389)
chr5 (204-267)||(39688893-39688956)
chr5 (213-267)||(9603863-9603917)
[»] chr1 (31 HSPs)
chr1 (199-275)||(27564723-27564799)
chr1 (199-275)||(38632309-38632385)
chr1 (203-275)||(43172-43244)
chr1 (203-275)||(2581955-2582027)
chr1 (203-275)||(8346376-8346448)
chr1 (203-275)||(9474864-9474936)
chr1 (203-275)||(48716270-48716342)
chr1 (211-275)||(50630506-50630570)
chr1 (203-273)||(3000359-3000429)
chr1 (203-273)||(38595194-38595264)
chr1 (211-273)||(44548366-44548428)
chr1 (203-275)||(41758845-41758917)
chr1 (203-275)||(47452308-47452380)
chr1 (203-275)||(49811515-49811587)
chr1 (206-275)||(11152366-11152435)
chr1 (211-275)||(32813295-32813359)
chr1 (203-275)||(51898671-51898743)
chr1 (203-270)||(13414801-13414868)
chr1 (199-267)||(5958996-5959064)
chr1 (203-275)||(37649238-37649310)
chr1 (203-273)||(26274472-26274542)
chr1 (206-271)||(48489343-48489408)
chr1 (204-267)||(50590996-50591059)
chr1 (211-273)||(26440782-26440844)
chr1 (206-263)||(3302533-3302590)
chr1 (203-272)||(45044551-45044620)
chr1 (204-258)||(44334175-44334229)
chr1 (201-272)||(37926429-37926500)
chr1 (212-267)||(41608489-41608544)
chr1 (211-273)||(44454027-44454089)
chr1 (211-275)||(23597079-23597143)
[»] scaffold0321 (1 HSPs)
scaffold0321 (203-275)||(10097-10169)
[»] scaffold0237 (1 HSPs)
scaffold0237 (199-272)||(4065-4138)
[»] scaffold1268 (1 HSPs)
scaffold1268 (207-275)||(917-985)
[»] scaffold1267 (1 HSPs)
scaffold1267 (207-275)||(917-985)
[»] scaffold0316 (1 HSPs)
scaffold0316 (206-272)||(17097-17163)
[»] scaffold0018 (1 HSPs)
scaffold0018 (204-267)||(152539-152602)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 3381487 - 3381661
Alignment:
Q  1 tagagtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgtgagttttctatatcaattcatgtttgctatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  3381487 tagagtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccactttgagttttctatatcaattcatgtttgctatttc 3381586  T
Q  101 tcactatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3381587 tcactatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 3381661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 9058520 - 9058592
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9058520 tttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 9058592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 10249446 - 10249370
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10249446 accttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 10249370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 19930880 - 19930808
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19930880 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacacactttctcttttctctcct 19930808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 13438383 - 13438455
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13438383 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 13438455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 32505712 - 32505636
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32505712 accttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctattttctctcct 32505636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 17473060 - 17473132
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  17473060 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 17473132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 28863495 - 28863567
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  28863495 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctcct 28863567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 40701514 - 40701588
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  40701514 accttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctc 40701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 4060721 - 4060795
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| |||||||||    
T  4060721 accttttgacatccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttcttttttctctc 4060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 7465795 - 7465725
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  7465795 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttatctc 7465725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 28381719 - 28381645
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||| |||| ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  28381719 acctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcacactttctcttttctctc 28381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 33436160 - 33436090
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  33436160 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctc 33436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 5574548 - 5574479
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  5574548 tttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctct 5574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 27864744 - 27864808
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  27864744 tttgacatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcacactttctcttt 27864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 40613962 - 40613890
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||    
T  40613962 tttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctctcct 40613890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 20700865 - 20700927
Alignment:
Q  213 acacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  20700865 acacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctctttcctctcct 20700927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 30915511 - 30915573
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  30915511 ccacataaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 30915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 38882874 - 38882802
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtgga---ccccgcacaagcacactttctcttttctct 272  Q
    |||||||||||||||||||||||||||||||||| |||||   |||||||||||| |||||||||||||||||    
T  38882874 tttgacatccacacaaaaatctgacacgtagtcacgtggacccccccgcacaagcgcactttctcttttctct 38882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 38273194 - 38273130
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||    
T  38273194 ccacacaaaaatctgacacgtagccacatggaccccgcactagcacactttctcttttctctcct 38273130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 42257233 - 42257305
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||| ||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||    
T  42257233 tttgacacccacataaaaatctgacacgtggccacatggaccccgcacaagcacactttctcttttctctcct 42257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 3737986 - 3738055
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||| |||||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctcct 3738055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 38732395 - 38732458
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||    
T  38732395 ttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctcttt 38732458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 2533171 - 2533235
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||||||||| |||||| ||||||    
T  2533171 ccacacaaaaatctgacacgtagccacatagaccccgcacaagcacactttttcttttatctcct 2533235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 36168884 - 36168948
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||| |||||||| | ||  ||||||||||||||||| |||||||||||||||||||    
T  36168884 ccacacaaaaatttgacacgtggccacatggaccccgcacaagcatactttctcttttctctcct 36168948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 2997546 - 2997483
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  2997546 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 2997483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 41575177 - 41575242
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggacccc-gcacaagcacactttctcttt 267  Q
    |||||||| ||||||||||| ||||| || ||||||||||||||  ||||||||||||||||||||    
T  41575177 tttgacattcacacaaaaatttgacatgtggtcatgtggacccctacacaagcacactttctcttt 41575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 33436247 - 33436315
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||| ||||| |||||||||||||||   |||||||||   |||||||||||||||||||||    
T  33436247 accttttgacacccacataaaaatctgacacgtgaccatgtggactttgcacaagcacactttctcttt 33436315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 13365394 - 13365457
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| ||   ||| ||||||||||||||| |||||||||||||    
T  13365394 ttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctcttt 13365457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 43490162 - 43490225
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| ||||||| |||||    
T  43490162 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttatcttt 43490225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 45097794 - 45097731
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||| |||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  45097794 ttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 45097731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 3035033 - 3034979
Alignment:
Q  213 acacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||||||||||||| || ||||| ||||||||||||||| | |||||||||||    
T  3035033 acacaaaaatctgacatgtggtcatatggaccccgcacaagtatactttctcttt 3034979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 26891561 - 26891495
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    |||| |||||||||||||||||| || |||| ||||||| || ||||||||| ||||||||| ||||    
T  26891561 gacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacattttctctttcctct 26891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 3440022 - 3440091
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||| |||||||||||||| ||| ||  | | |||||||||||||||||||| ||||||||| |||||||    
T  3440022 gacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacattttctctttcctctcct 3440091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 17820063 - 17820000
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || || | ||||||||| ||||| |||| |||||||||    
T  17820063 ttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacattttctcttt 17820000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 7272 - 7443
Alignment:
Q  5 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgt-gagttttctatatcaattcatgtttgctatttctca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||| |||||||||||||||||||||||||||    
T  7272 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccacttttgagttttccatatcaattcatgtttgctatttctca 7371  T
Q  104 ctatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  7372 ctatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtattcagtcagcgaacgt 7443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 17185 - 17356
Alignment:
Q  5 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgt-gagttttctatatcaattcatgtttgctatttctca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||| |||||||||||||||||||||||||||    
T  17185 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccacttttgagttttccatatcaattcatgtttgctatttctca 17284  T
Q  104 ctatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  17285 ctatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtattcagtcagcgaacgt 17356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 21797 - 21626
Alignment:
Q  5 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgt-gagttttctatatcaattcatgtttgctatttctca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||||| |||||||||||||||||||||||||||    
T  21797 gtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccacttttgagttttccatatcaattcatgtttgctatttctca 21698  T
Q  104 ctatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  21697 ctatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtattcagtcagcgaacgt 21626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 50670 - 50495
Alignment:
Q  1 tagagtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgt-gagttttctatatcaattcatgtttgctattt 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||| |||    
T  50670 tagagtaaaccatgtgaatctctgatgccatttttatctttttatgaatagcggtgacatccacttttgagttttctatatcaattcatgtttgctgttt 50571  T
Q  100 ctcactatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  50570 ctcactatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtattcagtcagcgaacgt 50495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 44498898 - 44499073
Alignment:
Q  1 tagagtaaaccatgtgaatctgtgatgccatttttatctttttatgaatagcggtgacatccggtgt-gagttttctatatcaattcatgtttgctattt 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||| |||    
T  44498898 tagagtaaaccatgtgaatctctgatgccatttttatctttttatgaatagcggtgacatccacttttgagttttctatatcaattcatgtttgctgttt 44498997  T
Q  100 ctcactatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcgaacgt 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  44498998 ctcactatcaactcattttttatcgtataaattgtggtccatcatgaatacataattgtattcagtcagcgaacgt 44499073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 40424003 - 40423931
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40424003 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 40423931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 12831087 - 12831159
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12831087 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 12831159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14547962 - 14548034
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14547962 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 14548034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 15197373 - 15197445
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15197373 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 15197445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 23122661 - 23122585
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  23122661 accttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcataagcacactttctcttttctctcct 23122585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 504185 - 504111
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  504185 accttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacattctcttttctctc 504111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 1180000 - 1179928
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  1180000 tttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactttctcttttctctcct 1179928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 8841492 - 8841420
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  8841492 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcct 8841420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 34012356 - 34012284
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  34012356 tttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 34012284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 5957870 - 5957942
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||    
T  5957870 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttctctttcctctcct 5957942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 9122233 - 9122297
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  9122233 ccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 9122297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 10284691 - 10284627
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  10284691 tttgacacccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcacactttctcttt 10284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 37038519 - 37038591
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||    
T  37038519 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctcct 37038591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 44507139 - 44507077
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  44507139 ccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcatactttctcttttctctc 44507077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 10621147 - 10621075
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||||| ||  | || ||||||||||||||||||||||||||||||||    
T  10621147 tttgacacccacacaaaaatctgacacgtagccacatcgatcccgcacaagcacactttctcttttctctcct 10621075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 43414641 - 43414569
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| |||||| ||||  |||| ||||||||||||||||||||||||||||||||    
T  43414641 tttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacactttctcttttctctcct 43414569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 15048234 - 15048177
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctctttt 268  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  15048234 ccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactttctctttt 15048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 15258986 - 15258917
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||| |||||||||||| || |||| |||||||| ||||||||||| ||||||||| |||||||    
T  15258986 gacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcct 15258917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 42221558 - 42221619
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||| |||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||    
T  42221558 gacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacactttctcttt 42221619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 16056460 - 16056397
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  16056460 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 16056397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 16383418 - 16383481
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  16383418 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 16383481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 17443874 - 17443929
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||    
T  17443874 cacacaaaaatctgacatgtagtcatgtggaccccacacaaagacactttctcttt 17443929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 24307852 - 24307789
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||| | || | ||| ||||||||||||||| |||||||||||||    
T  24307852 ttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaagtacactttctcttt 24307789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 32032765 - 32032828
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||||||| || | ||| |||| || ||||||| |||||||||||||    
T  32032765 ttgacatccacacaaaaatctgacatgtggccatatggatcctgcacaagtacactttctcttt 32032828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 34307257 - 34307320
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| || |||||||||||| |||||||||||||    
T  34307257 ttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaagtacactttctcttt 34307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 4854887 - 4854851
Alignment:
Q  239 tggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4854887 tggaccctgcacaagcacactttctcttttctctcct 4854851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 30479534 - 30479470
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||| |||||||||||| || |  || |||||| |||||||| |||||||||||||    
T  30479534 tttgacatccacataaaaatctgacatgtggctatatggacctcgcacaagtacactttctcttt 30479470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 14055651 - 14055609
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggacccc 246  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||    
T  14055651 ttgacatccacacaaaaatcttacatgtagtcacgtggacccc 14055609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 41236383 - 41236459
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41236383 accttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 41236459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 48183109 - 48183037
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48183109 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 48183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 480507 - 480435
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  480507 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctcct 480435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 42044419 - 42044355
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42044419 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 42044355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 50052488 - 50052416
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  50052488 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcct 50052416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 11511522 - 11511453
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11511522 tttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctct 11511453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 29234294 - 29234233
Alignment:
Q  214 cacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29234294 cacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 29234233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 6034084 - 6034156
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  6034084 tttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 6034156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 29239926 - 29239998
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  29239926 tttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacactttctctttcctctcct 29239998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 54473593 - 54473521
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  54473593 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttatcttttctctcct 54473521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 41823930 - 41823992
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41823930 ccacacaaaaatctgacacgtagtcacatggaccccgcacaagcacactttctcttttctctc 41823992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 24995167 - 24995095
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  24995167 tttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacattttctcttttctctcct 24995095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 31910232 - 31910302
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| ||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||    
T  31910232 tttgacacccacacaaaaatctgacacatagccacatggaccccgcacaagcacactttctcttttctctc 31910302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 53352616 - 53352554
Alignment:
Q  213 acacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||    
T  53352616 acacaaaaatctgacacgtagttaagtggaccccgcacaagcatactttctcttttctctcct 53352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 3481694 - 3481758
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  3481694 tttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacactttctcttt 3481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 23608275 - 23608347
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||| || || ||||||||||||||||||||| ||||||    
T  23608275 tttgacacccacacaaaaatctgacacgtagtcacgtgaactccacacaagcacactttctcttttatctcct 23608347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 29977933 - 29977989
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  29977933 ccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctcttt 29977989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 47986249 - 47986312
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  47986249 ttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 47986312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 28480319 - 28480267
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctc 264  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  28480319 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctc 28480267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 28481194 - 28481142
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctc 264  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  28481194 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctc 28481142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 28482069 - 28482017
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctc 264  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  28482069 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacacactttctc 28482017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 50526231 - 50526159
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||| |||| |||||  |||||||||||| |||||| ||| |||||||    
T  50526231 tttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagcacgctttctatttcctctcct 50526159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 56300225 - 56300153
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||| || ||||| || | || |||||| |||||||||||||| |||||||    
T  56300225 tttgacatccacacaaaaatctgacatgtggtcatatgaatcctgcacaaacacactttctctttcctctcct 56300153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 17983802 - 17983739
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  17983802 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 17983739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 50813951 - 50813888
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || ||||| || |||||||||||| |||||||||||||    
T  50813951 ttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaagtacactttctcttt 50813888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 40574819 - 40574891
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||  |  |  |||| |||| |||||||||||||||||||||||||||    
T  40574819 tttgacacccacacaaaaatctgacacgctgctacatggatcccgaacaagcacactttctcttttctctcct 40574891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 48647778 - 48647714
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||| |||||||| |||||| |||| |||||| ||||||||||||| ||||||||| |||||||    
T  48647778 ccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctcct 48647714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 19670767 - 19670712
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  19670767 cacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 19670712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 44536805 - 44536742
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||||||| || ||||| | |||||| || ||| |||||||||||||    
T  44536805 ttgacatccacacaaaaatctgacatgtggtcatatagaccccacataagtacactttctcttt 44536742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 55475231 - 55475295
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| |||||||||||||||||| || | ||| ||||||| ||| ||| |||||||||||||    
T  55475231 tttgacacccacacaaaaatctgacatgtggccatatggaccctgcataagtacactttctcttt 55475295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 29589799 - 29589736
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||| | || | ||| |||||||| |||||| |||||||||||||    
T  29589799 ttgacacccacacaaaaatctgatatgtggccatatggaccccacacaagtacactttctcttt 29589736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 32766999 - 32767062
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||| |||||||||||||| || | ||| ||||||| ||||||| |||||||||||||    
T  32766999 ttgacacccatacaaaaatctgacatgtggccatatggaccctgcacaagtacactttctcttt 32767062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 18769157 - 18769223
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctccttt 277  Q
    ||||||||||||||||||||| |||||||  ||||| |||||  ||| |||||||||  ||||||||    
T  18769157 ccacacaaaaatctgacacgtggtcatgtaaaccccacacaaatacattttctctttcatctccttt 18769223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 31456729 - 31456801
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31456729 tttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 31456801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 33644240 - 33644312
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33644240 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 33644312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 53982051 - 53982123
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53982051 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 53982123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 27714951 - 27714882
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27714951 tttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttctctct 27714882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 17470441 - 17470515
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  17470441 accttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctctc 17470515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 52629340 - 52629410
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  52629340 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 52629410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 54868959 - 54868885
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  54868959 accttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcacactttctcttttctctc 54868885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 8076433 - 8076505
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  8076433 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctcct 8076505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 49607454 - 49607526
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  49607454 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctcct 49607526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 47531901 - 47531977
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||    
T  47531901 accttttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcacactttctcttttctctcct 47531977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 11347982 - 11347910
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||||||||| | ||  ||||||| ||| |||||||||||||||||||||||||    
T  11347982 tttgacatccacacaaaaatctgacacgtggccacatggaccctgcataagcacactttctcttttctctcct 11347910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 26141584 - 26141520
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  26141584 ccacacaaaaatctgacacgtggtcacatggaccccacacaagcacactttctcttttctctcct 26141520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 11907420 - 11907483
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||    
T  11907420 cacacaaaaatctgacatgtggtcatatggaccccgcacaagcacattttctcttttctctcct 11907483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 48587151 - 48587081
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| | ||| |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  48587151 tttgacacctacataaaaatctgacacgtagtcacgtggatcccgcacaagtacactttctcttttctctc 48587081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 26754738 - 26754807
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||| || ||||  ||||||||||||||||||| ||||||||| |||||||    
T  26754738 gacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctctcct 26754807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 9563039 - 9563111
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| | |||||||||||||||||||| ||||| || |||||| |||||||||||| |||||||||    
T  9563039 tttgacatccatataaaaatctgacacgtagtcacgtggatcctgcacaaacacactttctctcttctctcct 9563111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 41189824 - 41189752
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||| |||||| |||||||| | ||  |||||||||||||||||||||||||||||||||||||    
T  41189824 tttgacacccacataaaaatttgacacgtggccacatggaccccgcacaagcacactttctcttttctctcct 41189752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 51419412 - 51419348
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||| | ||  | |||||||||||||||||||||||||||||||||||    
T  51419412 ccacacaaaaatctgacacgtggccacatagaccccgcacaagcacactttctcttttctctcct 51419348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 36707484 - 36707416
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||    |||||||||||||||||||||||    
T  36707484 tttgacatccacacaaaaatctgacacgtagttacgtggatcccgc----gcacactttctcttttctctcct 36707416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 11095413 - 11095346
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| |||||||||||||||||||||||||| ||  |||||||| || |||||||||||||||||||    
T  11095413 tttgacacccacacaaaaatctgacacgtagtcacgt--accccgcataaacacactttctcttttctct 11095346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 20764967 - 20764905
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||||||||||||| | ||  ||||||||| |||||||||||||||||||||||||    
T  20764967 ccacacaaaaatctgacacgtggccacatggaccccgtacaagcacactttctcttttctctc 20764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 33118911 - 33118839
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||| ||||||||||||| ||||| ||| || || |||||||||||||| |||||||    
T  33118911 tttgacacccacacaaaaatttgacacgtagtcacgtggatccctcagaaacacactttctctttcctctcct 33118839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 13898114 - 13898051
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||||| |||||||||||||||  ||||||||||| | ||||||||||||||||||||    
T  13898114 ttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttctcttt 13898051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 36331388 - 36331325
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  36331388 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 36331325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 30801785 - 30801723
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||| ||||| |||||||| |||||||| |||||||||| ||||||||| |||||    
T  30801785 ccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctctttcctctc 30801723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 24700018 - 24699942
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| ||||| ||||||||| ||||| | || |||||||| | |||| |||||||||||||| |||||||    
T  24700018 accttttgacacccacataaaaatctggcacgtggccacgtggaccctgtacaaacacactttctctttcctctcct 24699942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 14623898 - 14623835
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||||| |||||||||||| ||  ||||||||||| | ||||||||||||||||||||    
T  14623898 ttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacactttctcttt 14623835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 35093625 - 35093688
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctctt 266  Q
    |||||||||||| ||||||||||||| || |||||||| || ||  ||||||||||||||||||    
T  35093625 tttgacatccacgcaaaaatctgacatgtggtcatgtgaactccatacaagcacactttctctt 35093688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 48375760 - 48375694
Alignment:
Q  209 atccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||| |||||||||||||  || ||||  ||||||||||||||||||| ||||||||| |||||||    
T  48375760 atccatacaaaaatctgacgtgtggtcacatggaccccgcacaagcacattttctctttcctctcct 48375694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 35536666 - 35536730
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| ||||| |||||| |||||||| ||||||||||||   ||||||||||||| ||||||    
T  35536666 tttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttcctcttt 35536730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 39670052 - 39670123
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||| | | |||||| ||||||||  ||||||||||| || ||| |||||||| ||||||||||||||    
T  39670052 ttgacatctatataaaaatttgacacgtgatcatgtggacctcgtacacgcacacttcctcttttctctcct 39670123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 8956802 - 8956866
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| ||||| |||||| ||||||||  |||||||||||   ||||||||||||| ||||||    
T  8956802 tttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttcctcttt 8956866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 41080748 - 41080811
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| |||| ||||||||||| | || |||||||||| ||| |||||||||| |||||||||    
T  41080748 tttgacacccacgcaaaaatctgatatgtggtcatgtgga-cccacacaagcacattttctcttt 41080811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 3694403 - 3694479
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3694403 accttttaacacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcacactttctcttttctctcct 3694479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 7389429 - 7389501
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7389429 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 7389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 19329878 - 19329954
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  19329878 accttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctcct 19329954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 38267080 - 38267152
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38267080 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 38267152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 3784033 - 3784107
Alignment:
Q  201 cttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  3784033 cttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 3784107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 32951549 - 32951481
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32951549 acatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 32951481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 30110736 - 30110572
Alignment:
Q  1 tagagtaaaccatgtgaatctgt-gatgccatttttatctttttatgaatagcggtgacatccggtgtgagttttctatatcaattcatgtttgctattt 99  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||  ||||||  | |||||||  || |   |||||   ||||||||||||||||||||    
T  30110736 tagagtaaaccatgtgaatatgtagatgccatttttatcttttttagaataggagcgacatccactgag---tttcttactcaattcatgtttgctattt 30110640  T
Q  100 ctcactatcaactcatgttttatcgtataaattgtggtccatcatgaatacataattgtataatgtcagcg 170  Q
    |||| ||||   |||| ||||| ||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  30110639 ctcagtatc---tcattttttagcgtatcaattgtggtccatcatgagtgcataactgtataatgtcagcg 30110572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 38837267 - 38837329
Alignment:
Q  213 acacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38837267 acacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 38837329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 19436251 - 19436178
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  19436251 accttttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcataagcacactttctcttttctct 19436178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 36361973 - 36361904
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  36361973 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctct 36361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 36362066 - 36362135
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  36362066 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacactttctcttttctct 36362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 4999578 - 4999502
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  4999578 accttttgacacccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacacactttctcttttatctcct 4999502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 8080443 - 8080371
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8080443 tttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 8080371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 35137573 - 35137645
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35137573 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacacactttctcttttctctcct 35137645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 3434602 - 3434672
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  3434602 tttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctc 3434672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 40957755 - 40957817
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  40957755 ccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcacactttctcttttctctc 40957817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 8238253 - 8238317
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  8238253 tttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaagtacactttctcttt 8238317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 38044238 - 38044301
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||    
T  38044238 ttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaagtacactttctcttt 38044301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 35522924 - 35522986
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||    
T  35522924 ccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctcttttctctc 35522986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 26296688 - 26296756
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||| |||||||||| |||| | ||| |||||||||||||||| || |||||||||||||||||    
T  26296688 acatccacataaaaatctgatacgtggccatatggaccccgcacaagcgcattttctcttttctctcct 26296756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 16374883 - 16374820
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||||||||||||||||||||||||| |||| ||||| | | ||||||||||| ||||||||    
T  16374883 ttgacatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcacacattctcttt 16374820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 36208214 - 36208285
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||| ||||||||||| |||||| || |||| |||||||| ||||||||||| ||||||||| |||||||    
T  36208214 ttgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctcct 36208285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 40846172 - 40846109
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||| ||| ||||| || ||||||||||||||  |||||||||||||    
T  40846172 ttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaaatacactttctcttt 40846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 11044238 - 11044288
Alignment:
Q  223 ctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  11044238 ctgacacgtagtcacgtggaccccgcacaagtacactttctctttcctctc 11044288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 7727942 - 7728006
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttct 263  Q
    |||| ||||||| |||| |||||||||||| || ||||| ||||||||||||||| |||||||||    
T  7727942 acctcttgacattcacataaaaatctgacatgtggtcatatggaccccgcacaagtacactttct 7728006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 22343402 - 22343465
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| ||   ||| ||||||||||||||| |||||||||||||    
T  22343402 ttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaagtacactttctcttt 22343465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 41915782 - 41915845
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| | |||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  41915782 ttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 41915845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 21234441 - 21234515
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctccttt 277  Q
    |||||||  ||||||||||| |||||||||| ||  || |||||||||||||||| ||||||||  |||||||||    
T  21234441 tttgacactcacacaaaaatttgacacgtagccacatgtaccccgcacaagcacattttctcttacctctccttt 21234515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 31735953 - 31735989
Alignment:
Q  239 tggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31735953 tggatcccgcacaagcacactttctcttttctctcct 31735989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 46033853 - 46033789
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||| ||||||||||||||| ||||  || || ||||||||||| | |||||||||||||||||    
T  46033853 ccacataaaaatctgacacgtggtcacatgaactccgcacaagcatattttctcttttctctcct 46033789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 32564485 - 32564422
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || |  || ||||||||||||||  |||||||||||||    
T  32564485 ttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaaatacactttctcttt 32564422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 46374854 - 46374808
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcaca 257  Q
    ||||||||||||||||||||| | ||  |||||||||||||||||||    
T  46374854 ccacacaaaaatctgacacgtggccacatggaccccgcacaagcaca 46374808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 2318307 - 2318239
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||| |||||| |||||||||||||||||  || |||| ||||||||  || ||||| |||||||||||    
T  2318307 acctcttgacacccacacaaaaatctgacgtgtggtcacgtggacccgacataagcatactttctcttt 2318239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 18207216 - 18207283
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||| |||||| ||| |||||||||| |||||| | || ||| ||||| ||||||||||||||||||||    
T  18207216 acctcttgacacccatacaaaaatctaacacgtgg-cacgtgaaccccacacaagcacactttctcttt 18207283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 32869718 - 32869790
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32869718 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 32869790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 17598592 - 17598666
Alignment:
Q  201 cttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  17598592 cttttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacactttctcttttctctcct 17598666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 11427658 - 11427730
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11427658 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 11427730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 22880718 - 22880646
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22880718 tttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 22880646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 23128187 - 23128115
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  23128187 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctcttttctctcct 23128115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 31109460 - 31109388
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||    
T  31109460 tttgacatccacacaaaaatctgacacgtagtcacgtagaccccgcaaaagtacactttctcttttctctcct 31109388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 6209525 - 6209453
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||  |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  6209525 tttgacactcacacaaaaatctgtcacgtagtcacgtggaccccgcactagcacactttctcttttctctcct 6209453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 29857863 - 29857936
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| ||| |||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  29857863 accttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctct 29857936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 31976296 - 31976360
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||||    
T  31976296 ccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcacactttctcttttctctcct 31976360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 28536545 - 28536483
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctctttt 268  Q
    |||||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  28536545 ttgacacccacacaaaaatctgacacg--gtcatgtggaccccacacaagcacactttctctttt 28536483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 4231596 - 4231652
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||    
T  4231596 ccacacaaaaatctgacacgtggccatatggaccccgcacaagtacactttctcttt 4231652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 15508083 - 15508020
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  15508083 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 15508020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 15990101 - 15990038
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  15990101 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 15990038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 30341419 - 30341356
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  30341419 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 30341356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 31110810 - 31110752
Alignment:
Q  214 cacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    |||||||||||||||||||  ||  ||||||| ||||||||||||||||||||||||||    
T  31110810 cacaaaaatctgacacgtaaccacatggaccctgcacaagcacactttctcttttctct 31110752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 15832617 - 15832689
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||| ||||||||||||| ||||| || ||||||  ||| |||||||||| ||||||    
T  15832617 tttgacacccacacaaaaatttgacacgtagtcacgtggatcctgcacaaatacattttctcttttttctcct 15832689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 946416 - 946488
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| | || |||||||||||||| |||||| ||  | ||||| | ||||||||||||||||||||||||    
T  946416 tttgacacctacccaaaaatctgacacctagtcacgtaaatcccgctctagcacactttctcttttctctcct 946488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 12732523 - 12732586
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||||||||||||||||||||| |  ||||||| ||| || ||||||| |||||||||    
T  12732523 ttgacacccacacaaaaatctgacacgtggctatgtggatcccacataagcacattttctcttt 12732586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 31953089 - 31953026
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||||| |||||||||||| ||  ||||||||||| | ||||| ||||||||||||||    
T  31953089 ttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacactttctcttt 31953026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 30870068 - 30870126
Alignment:
Q  217 aaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||| ||| || ||||  ||||||||||||||||||| ||||||||| |||||||    
T  30870068 aaaaatctaacatgtggtcacatggaccccgcacaagcacattttctctttcctctcct 30870126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 40145451 - 40145519
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40145451 acatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 40145519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 13811692 - 13811764
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  13811692 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttctctctcct 13811764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 18520944 - 18520872
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18520944 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttatctcct 18520872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 36733002 - 36732930
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  36733002 tttgacacccacacaaaaatctgacacatagtcacgtggaccccgcacaagcacactttctcttttctctcct 36732930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 42414362 - 42414290
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  42414362 tttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttatcttttctttcct 42414290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 2740314 - 2740385
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcc 274  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  2740314 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcc 2740385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 33149698 - 33149626
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  33149698 tttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 33149626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 35785235 - 35785309
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||| |||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||    
T  35785235 accttttgacacccacacaaaaatctgacacgtagttacgtggatcccgcacaatcacactttctcttttctctc 35785309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 6679734 - 6679810
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| ||||||||||||||||||||| ||||  |||||||||||||| |||| |||||||||||||||||    
T  6679734 accttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacattttctcttttctctcct 6679810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 15409670 - 15409598
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||    
T  15409670 tttgacacccacacaaaaatctgacacgtagccacatggaccccgcacaagcacactctctcttttctctcct 15409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 28177815 - 28177887
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||    
T  28177815 tttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacactttctcttttctctcct 28177887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 14831854 - 14831926
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||    
T  14831854 tttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacactttcttttttttctcct 14831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 31132390 - 31132454
Alignment:
Q  209 atccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||    
T  31132390 atccacacaaaaatctgacaagtagtcacgtggaccccgcacaagcatactttttcttttctctc 31132454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 35943952 - 35943880
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||| |||||||    
T  35943952 tttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttctctttcctctcct 35943880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 31009036 - 31009097
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  31009036 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctct 31009097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 2252227 - 2252164
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  2252227 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 2252164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 3921324 - 3921261
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  3921324 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 3921261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 39557573 - 39557505
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||  |||  ||||||||  |||| ||||||||||||||| ||||||    
T  39557573 acatccacacaaaaatctgacacgtgatcacatggaccccatacaatcacactttctcttttatctcct 39557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 26720570 - 26720625
Alignment:
Q  217 aaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||||||||||| | ||  |||| |||||||||||||||||||||||||||||    
T  26720570 aaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctct 26720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 26990319 - 26990374
Alignment:
Q  217 aaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||||||||||| | ||  |||| |||||||||||||||||||||||||||||    
T  26990319 aaaaatctgacacgtggccacatggatcccgcacaagcacactttctcttttctct 26990374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 21370052 - 21370114
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||| ||||||||||||| || |||| ||||||||||||||| |||| ||||||||| |||||    
T  21370052 ccactcaaaaatctgacatgtggtcacgtggaccccgcacaaacacattttctctttcctctc 21370114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 41470462 - 41470425
Alignment:
Q  217 aaaaatctgacacgtagtcatgtggaccccgcacaagc 254  Q
    |||||||||||||||||||| |||||||||||||||||    
T  41470462 aaaaatctgacacgtagtcacgtggaccccgcacaagc 41470425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 33825383 - 33825319
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctctttt 268  Q
    |||||| ||||| |||||||||||||||  ||||||| |||   |||||||||||||||||||||    
T  33825383 ttgacacccacataaaaatctgacacgtgttcatgtgaaccttacacaagcacactttctctttt 33825319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 36875644 - 36875600
Alignment:
Q  231 tagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||    
T  36875644 tagtcacgtggatcccgcacaagcacactttctcttttttctcct 36875600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 16327942 - 16328005
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| ||||| |||||||||||||||  ||||||| ||| | |||||||||||||| |||||    
T  16327942 ttgacacccacataaaaatctgacacgtgttcatgtgcacctcacacaagcacactttttcttt 16328005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 25831334 - 25831389
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||| |||||||| |||||| |||||||||||||| ||||| |||| |||||||||    
T  25831334 cacaaaaaaatctaacacgtggtcatgtggaccccacacaaacacattttctcttt 25831389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 39688956 - 39688893
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||| | || ||||| || |||||||| ||| |||||||||||||    
T  39688956 ttgacacccacacaaaaatctgatatgtggtcatatgaaccccgcataagtacactttctcttt 39688893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 9603863 - 9603917
Alignment:
Q  213 acacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||| | ||||| ||||||||  |||| ||||||||||||||    
T  9603863 acacaaaaatctgacacatggtcatatggaccccatacaatcacactttctcttt 9603917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 27564799 - 27564723
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  27564799 accttttgacacccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcacactttctcttttctctcct 27564723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 38632385 - 38632309
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  38632385 accttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttttcttttctctcct 38632309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 43172 - 43244
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  43172 tttgacacccacacaaaaatctgacacgtagtcacgtggactccgcacaagcacactttctcttttctctcct 43244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 2581955 - 2582027
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  2581955 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttcttttttctctcct 2582027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 8346448 - 8346376
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  8346448 tttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacactttctcttttctctcct 8346376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 9474936 - 9474864
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  9474936 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacacactttctcttttctctcct 9474864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 48716342 - 48716270
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  48716342 tttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttatcttttctttcct 48716270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 50630506 - 50630570
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50630506 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctcct 50630570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 3000359 - 3000429
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  3000359 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 3000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 38595194 - 38595264
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  38595194 tttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcacactttctcttttctctc 38595264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 44548428 - 44548366
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44548428 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctcttttctctc 44548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 41758845 - 41758917
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  41758845 tttgacaaccacacaaaaatctgacacgtagtcacatggaccccgcacaaacacactttctcttttctctcct 41758917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 47452380 - 47452308
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  47452380 tttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacactttctcttttctctcct 47452308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 49811587 - 49811515
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||    
T  49811587 tttgacatccacacaaaaatctgacacgtagccatatagactccgcacaagcacactttctcttttctctcct 49811515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 11152435 - 11152366
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||    
T  11152435 gacatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagcacgctttctttttcctctcct 11152366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 32813295 - 32813359
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  32813295 ccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacactttctcttttctctcct 32813359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 51898743 - 51898671
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||    
T  51898743 tttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctatttcctctcct 51898671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 13414801 - 13414868
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttct 270  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||    
T  13414801 tttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttttct 13414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 5959064 - 5958996
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||| |||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||    
T  5959064 acctcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaagtacactttctcttt 5958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 37649238 - 37649310
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||| ||||||||||||||||||||| |||| ||| |  |||||||||||||||||| ||||||||||||    
T  37649238 tttgacacccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcacactttcccttttctctcct 37649310  T

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Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 26274472 - 26274542
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||||| ||||||||||||| |||||| ||||| || ||||||| ||||||| |||||||||||    
T  26274472 tttgacatccacagaaaaatctgacacatagtcacgtggatcctgcacaagtacactttttcttttctctc 26274542  T

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Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 48489343 - 48489408
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctc 271  Q
    ||||||||||||||||||||||| || |||| ||||| |||||||||||||| ||||| |||||||    
T  48489343 gacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacattttctattttctc 48489408  T

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Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 50591059 - 50590996
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || | ||| ||||||||||||||| |||||||||||||    
T  50591059 ttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaagtacactttctcttt 50590996  T

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Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 26440782 - 26440844
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    ||||||||||||||||||||| | ||  |||| |||||| |||||||||||||||||||||||    
T  26440782 ccacacaaaaatctgacacgtggccacatggatcccgcataagcacactttctcttttctctc 26440844  T

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Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 3302590 - 3302533
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttct 263  Q
    |||| |||||||||||||||||||||| |||| ||||||||  |||||||||||||||    
T  3302590 gacacccacacaaaaatctgacacgtaatcatatggaccccatacaagcacactttct 3302533  T

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Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 45044620 - 45044551
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| ||| |||||||||||||| |||| ||  |||||||||||||| |||| ||||||||||||||    
T  45044620 tttgacacccatacaaaaatctgacatgtagccacatggaccccgcacaaacacattttctcttttctct 45044551  T

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Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 44334229 - 44334175
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacac 258  Q
    |||||||||||||||||| ||||||||||||||  ||||||| |||||| |||||    
T  44334229 ttgacatccacacaaaaacctgacacgtagtcacatggacccagcacaaacacac 44334175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 37926500 - 37926429
Alignment:
Q  201 cttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||| ||| ||||| ||||||||||||||| | ||  |||| |||| ||||| ||||||||||||||||||    
T  37926500 cttttaacacccacataaaaatctgacacgtggccacatggatcccgtacaagtacactttctcttttctct 37926429  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 41608544 - 41608489
Alignment:
Q  212 cacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    ||||||||||||||||| || | ||| ||||||||| ||||| |||||||||||||    
T  41608544 cacacaaaaatctgacatgtggccatatggaccccgtacaagtacactttctcttt 41608489  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 44454027 - 44454089
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctc 273  Q
    |||||||||||||||||| || || | ||||| ||| |||||||||||||| ||||| |||||    
T  44454027 ccacacaaaaatctgacatgtggttacgtggatcccacacaagcacactttttctttcctctc 44454089  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 23597143 - 23597079
Alignment:
Q  211 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||| ||||||||||||||| | || || ||||  |||||| |||||||| |||||||||||||    
T  23597143 ccacataaaaatctgacacgtggccacgttgaccttgcacaaacacactttatcttttctctcct 23597079  T

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Target: scaffold0321 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 10169 - 10097
Alignment:
Q  203 tttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  10169 tttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcacactttctcttttctctcct 10097  T

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Target: scaffold0237 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 4065 - 4138
Alignment:
Q  199 accttttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||| ||| |||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  4065 accttttaacacccacacaaaaatctgacacgtagttacgtggatcccgcataagcacactttctcttttctct 4138  T

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Target: scaffold1268 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 985 - 917
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  985 acatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactttctctttcctctcct 917  T

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Target: scaffold1267 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 985 - 917
Alignment:
Q  207 acatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctctcct 275  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  985 acatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcacactttctctttcctctcct 917  T

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Target: scaffold0316 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 17097 - 17163
Alignment:
Q  206 gacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttttctct 272  Q
    ||||||||||||||||||||||| || ||||  ||||||||||||||||||| ||||||||| ||||    
T  17097 gacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctttcctct 17163  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 152539 - 152602
Alignment:
Q  204 ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttctcttt 267  Q
    |||||| |||||||||||||||||| || ||||| |||| |||||||||  |||||||||||||    
T  152539 ttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaaatacactttctcttt 152602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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