View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_55 (Length: 280)

Name: NF10129_low_55
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_55
NF10129_low_55
[»] chr8 (6 HSPs)
chr8 (19-265)||(36255281-36255529)
chr8 (58-168)||(15601564-15601672)
chr8 (58-168)||(15632867-15632975)
chr8 (214-265)||(15601444-15601499)
chr8 (214-265)||(15632742-15632797)
chr8 (231-265)||(32449306-32449340)
[»] chr4 (3 HSPs)
chr4 (20-261)||(41610783-41611016)
chr4 (20-82)||(31559423-31559485)
chr4 (201-260)||(31559276-31559337)
[»] chr3 (2 HSPs)
chr3 (47-141)||(31891163-31891257)
chr3 (201-265)||(45389928-45389994)
[»] chr7 (2 HSPs)
chr7 (20-148)||(22683962-22684086)
chr7 (20-90)||(22695370-22695444)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 36255281 - 36255529
Alignment:
Q  19 aatgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36255281 aatgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaac 36255380  T
Q  119 ttgagaagagaacttacaactagcattgactaaactttgaatttattcat--nnnnnnnnnnnnnnncagaactatttttattgatttctgggtatgtat 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||    
T  36255381 ttgaggagagaacttacaactagcattgactaaactttgaatttattcataaaaagaaaaaaaaaaacagaactatttttattgatttctgggtatgtat 36255480  T
Q  217 aaattcatggatggattatagtagtattgatatttcttcatctcctctt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36255481 aaattcatggatggattatagtagtattgatatttcttcatctcctctt 36255529  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 15601672 - 15601564
Alignment:
Q  58 aatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactagcattgactaaactttg 157  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    
T  15601672 aatatgtaaatcaatctgctttcatgatttattttacatttacatgataataaaagtaaactt--caagataacttacaactagcattgactaaactttg 15601575  T
Q  158 aatttattcat 168  Q
    |||||||||||    
T  15601574 aatttattcat 15601564  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 15632975 - 15632867
Alignment:
Q  58 aatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactagcattgactaaactttg 157  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||    
T  15632975 aatatataaatcaatctgctttcatgatttattttacatttacatgataataaaagtaaactt--caagataacttacaactagcattgaataaactttg 15632878  T
Q  158 aatttattcat 168  Q
    |||||||||||    
T  15632877 aatttattcat 15632867  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 15601499 - 15601444
Alignment:
Q  214 tataaattcatggatggattatagtag----tattgatatttcttcatctcctctt 265  Q
    ||||||| |||||||||||||||||||    |||||||||||||||||||||||||    
T  15601499 tataaatccatggatggattatagtagctagtattgatatttcttcatctcctctt 15601444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 15632797 - 15632742
Alignment:
Q  214 tataaattcatggatggattatagtag----tattgatatttcttcatctcctctt 265  Q
    ||||||| |||||||||||||||||||    |||||||||||||||||||||||||    
T  15632797 tataaatccatggatggattatagtagctagtattgatatttcttcatctcctctt 15632742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 32449306 - 32449340
Alignment:
Q  231 attatagtagtattgatatttcttcatctcctctt 265  Q
    |||||||||||||||||||||||||||||||||||    
T  32449306 attatagtagtattgatatttcttcatctcctctt 32449340  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 41611016 - 41610783
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaact 119  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||| | |||||||||||   | |||||||||||||||||||||||||||||    
T  41611016 atgcacaaggatatataagtgtcagtcatgcaaagaagaatatgtaaaccaaaccgctttcatgat---tattacatttacatgataataaaagtaaact 41610920  T
Q  120 tgagaagagaacttacaactagcattgactaaactttgaatttattcatnnnnnnnnnnnnnnncagaactatttttattgatttctgggtatg--tata 217  Q
    |  |||||||  |||||||| ||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||  ||||    
T  41610919 t--gaagaga--ttacaacttgcattgactaaactttgaatttattcat---aaagaaaaaaaacagaactatttttattgatttctgggtatgcatata 41610827  T
Q  218 aattcatggatggattatagtagtattgatatttcttcatctcc 261  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  41610826 aattcatggatgaattatagtagttttgatatttcttcatctcc 41610783  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31559485 - 31559423
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcat 82  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  31559485 atgcacaaggatatgtaagtgcctatcatgcaaagaagaatatgtaaaccaatctactttcat 31559423  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 31559337 - 31559276
Alignment:
Q  201 atttctgggtatg--tataaattcatggatggattatagtagtattgatatttcttcatctc 260  Q
    |||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  31559337 atttctgggtatgcatataaatccatggatggattataggagtattgatatttcttcatctc 31559276  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 31891163 - 31891257
Alignment:
Q  47 atgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactag 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  31891163 atgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgaagagagaacttacaactag 31891257  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 45389928 - 45389994
Alignment:
Q  201 atttctgggtatgtata--aattcatggatggattatagtagtattgatatttcttcatctcctctt 265  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45389928 atttctgggtatgcatacaaattcatggatggattatagtagtattgatatttcttcatctcctctt 45389994  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 22683962 - 22684086
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaa--gaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaa 117  Q
    |||||||||||||||||||||  ||||||| ||   |||||||||||||||||||||||||||||||||| |      || | || |||| |||||||||    
T  22683962 atgcacaaggatatataagtgactgtcatgaaacatgaagaatatgtaaaccaatctgctttcatgattttt------ttcaaataataagaaaagtaaa 22684055  T
Q  118 cttgagaagagaacttacaactagcattgac 148  Q
     ||||  ||| ||||||||||||||||||||    
T  22684056 tttgaagagataacttacaactagcattgac 22684086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 22695370 - 22695444
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaa----agaagaatatgtaaaccaatctgctttcatgatttatt 90  Q
    |||||||||||||||||||||| | ||||| ||    ||||||||||||||||| || |||||||||||||||||    
T  22695370 atgcacaaggatatataagtgcctatcatgaaacatgagaagaatatgtaaacctatatgctttcatgatttatt 22695444  T

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