View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_6 (Length: 526)
Name: NF10129_low_6
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_6 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 5619 - 5266
Alignment:
| Q |
18 |
aatagttatggtaaacacaaattataattataactataattgtttacatatacaaaaaatgagggatgaaaactaggtagcaaacaattctgtgaagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5619 |
aatagttatggtaaacacaaattataattataactataattgtttaaatatacaaaaaatgagggatgaaaactaggtagcaaacaattctgtgaagcaa |
5520 |
T |
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| Q |
118 |
gcaatgttttgttaaggaaactggggatgctttcggctgatgcagagttataacctgcagtaacataggtgaaaatgaaataaaagatgtgagaga---- |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5519 |
gcaatgttttgttaaggaaactggggatgctttcggctgatgcagagttataacctgcagtaacataggtgaaaatgaaataaaagatgtgagagagaga |
5420 |
T |
|
| Q |
214 |
--gagatagaataaaataatacaagaaatattcaatcatttgacatgtaaggtgttggctaggcccggttcctcagtgtttgatgcctctgcttgccaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5419 |
gagagatagaataaaataatacaagaaatattcaatcatttgacatgcaaggtgttggctaggcccggttcctcagtgtttgatgcctctgcttgccaga |
5320 |
T |
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| Q |
312 |
ttaattgtactcttcaattctgtcaaagtagattctatactattcttgtcgacc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5319 |
ttaattgtactcttcaattctgtcaaagtagattctatactattcttgtcgacc |
5266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 5230 - 5125
Alignment:
| Q |
412 |
aaaagatgaatgtgtattcactttccatctaaatttcttcatgattcttctcagtttctttctttcccttatggtgaaaactgtaatatatcttttttgt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230 |
aaaagatgaatgtgtattcactttccatctaaatttcttcatgattcttctcagtttctttctttcccttatggtgaaaactgtaatatatcttttttgt |
5131 |
T |
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| Q |
512 |
tcatct |
517 |
Q |
| |
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|||||| |
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| T |
5130 |
tcatct |
5125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 42901646 - 42901293
Alignment:
| Q |
18 |
aatagttatggtaaacacaaattataattataactataattgtttacatatacaaaaaatgagggatgaaaactaggtagcaaacaattctgtgaagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42901646 |
aatagttatggtaaacacaaattataattataactataattgtttaaatatacaaaaaatgagggatgaaaactaggtagcaaacaattctgtgaagcaa |
42901547 |
T |
|
| Q |
118 |
gcaatgttttgttaaggaaactggggatgctttcggctgatgcagagttataacctgcagtaacataggtgaaaatgaaataaaagatgtgagaga---- |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42901546 |
gcaatgttttgttaaggaaactggggatgctttcggctgatgcagagttataacctgcagtaacataggtgaaaatgaaataaaagatgtgagagagaga |
42901447 |
T |
|
| Q |
214 |
--gagatagaataaaataatacaagaaatattcaatcatttgacatgtaaggtgttggctaggcccggttcctcagtgtttgatgcctctgcttgccaga |
311 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42901446 |
gagagatagaataaaataatacaagaaatattcaatcatttgacatgcaaggtgttggctaggcccggttcctcagtgtttgatgcctctgcttgccaga |
42901347 |
T |
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| Q |
312 |
ttaattgtactcttcaattctgtcaaagtagattctatactattcttgtcgacc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42901346 |
ttaattgtactcttcaattctgtcaaagtagattctatactattcttgtcgacc |
42901293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 412 - 517
Target Start/End: Complemental strand, 42901257 - 42901152
Alignment:
| Q |
412 |
aaaagatgaatgtgtattcactttccatctaaatttcttcatgattcttctcagtttctttctttcccttatggtgaaaactgtaatatatcttttttgt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42901257 |
aaaagatgaatgtgtattcactttccatctaaatttcttcatgattcttctcagtttctttctttcccttatggtgaaaactgtaatatatcttttttgt |
42901158 |
T |
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| Q |
512 |
tcatct |
517 |
Q |
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|||||| |
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| T |
42901157 |
tcatct |
42901152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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