View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_60 (Length: 271)
Name: NF10129_low_60
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 14173369 - 14173114
Alignment:
| Q |
1 |
ataaaagtaatggtttgtgcttataatctttttcaaa-tgataggggttatcaacctcaaacataattaggatgcttgagtagcagctctttgcataact |
99 |
Q |
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| T |
14173369 |
ataaaagtaatggtttgtgcttataatccttttcaaaataataggggttatcaacctcaaacatgattaggatgcttgagtagcagctatttgcataact |
14173270 |
T |
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| Q |
100 |
gttgaattaaaaacttgattagaatattacaagaattgggaaccctttttaactagcagattcagttgtcaatggtcgattacgttttatatttacattg |
199 |
Q |
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| T |
14173269 |
gttgaattgaaaacttgattagaatattacaagaattgggaaccctttttaactagcagattcagttgttaatggtcgattgcgttttatatttacattg |
14173170 |
T |
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| Q |
200 |
aaacnnnnnnnatcctcccaccaaatttaaataactaacttagttatcacaaacat |
255 |
Q |
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| T |
14173169 |
aaactttttttaacctcccaccaaatttaaataactaacttagttatcacaaacat |
14173114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 14180600 - 14180502
Alignment:
| Q |
157 |
agattcagttgtcaatggtcgattacgttttatatttacattgaaacnnnnnnnatcctcccaccaaatttaaataactaacttagttatcacaaacat |
255 |
Q |
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| T |
14180600 |
agattctgctgtgaatggtcaattgagttttatatttacattgaaacctttttcatcctctcaccaaaattaaataactctcttagttatcacaaacat |
14180502 |
T |
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