View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_62 (Length: 268)

Name: NF10129_low_62
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_62
NF10129_low_62
[»] chr8 (6 HSPs)
chr8 (19-260)||(36255281-36255524)
chr8 (58-168)||(15601564-15601672)
chr8 (58-168)||(15632867-15632975)
chr8 (214-260)||(15601449-15601499)
chr8 (214-260)||(15632747-15632797)
chr8 (231-260)||(32449306-32449335)
[»] chr4 (3 HSPs)
chr4 (20-260)||(41610784-41611016)
chr4 (20-82)||(31559423-31559485)
chr4 (201-262)||(31559274-31559337)
[»] chr3 (2 HSPs)
chr3 (47-141)||(31891163-31891257)
chr3 (201-260)||(45389928-45389989)
[»] chr7 (2 HSPs)
chr7 (20-148)||(22683962-22684086)
chr7 (20-90)||(22695370-22695444)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 36255281 - 36255524
Alignment:
Q  19 aatgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36255281 aatgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaac 36255380  T
Q  119 ttgagaagagaacttacaactagcattgactaaactttgaatttattcat--nnnnnnnnnnnnnnncagaactatttttattgatttctgggtatgtat 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||    
T  36255381 ttgaggagagaacttacaactagcattgactaaactttgaatttattcataaaaagaaaaaaaaaaacagaactatttttattgatttctgggtatgtat 36255480  T
Q  217 aaattcatggatggattatagtagtattgatatttcttcatctc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36255481 aaattcatggatggattatagtagtattgatatttcttcatctc 36255524  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 15601672 - 15601564
Alignment:
Q  58 aatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactagcattgactaaactttg 157  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||    
T  15601672 aatatgtaaatcaatctgctttcatgatttattttacatttacatgataataaaagtaaactt--caagataacttacaactagcattgactaaactttg 15601575  T
Q  158 aatttattcat 168  Q
    |||||||||||    
T  15601574 aatttattcat 15601564  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 15632975 - 15632867
Alignment:
Q  58 aatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactagcattgactaaactttg 157  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||    
T  15632975 aatatataaatcaatctgctttcatgatttattttacatttacatgataataaaagtaaactt--caagataacttacaactagcattgaataaactttg 15632878  T
Q  158 aatttattcat 168  Q
    |||||||||||    
T  15632877 aatttattcat 15632867  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 15601499 - 15601449
Alignment:
Q  214 tataaattcatggatggattatagtag----tattgatatttcttcatctc 260  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||||    
T  15601499 tataaatccatggatggattatagtagctagtattgatatttcttcatctc 15601449  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 15632797 - 15632747
Alignment:
Q  214 tataaattcatggatggattatagtag----tattgatatttcttcatctc 260  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||||    
T  15632797 tataaatccatggatggattatagtagctagtattgatatttcttcatctc 15632747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 32449306 - 32449335
Alignment:
Q  231 attatagtagtattgatatttcttcatctc 260  Q
    ||||||||||||||||||||||||||||||    
T  32449306 attatagtagtattgatatttcttcatctc 32449335  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 41611016 - 41610784
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaact 119  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||| | |||||||||||   | |||||||||||||||||||||||||||||    
T  41611016 atgcacaaggatatataagtgtcagtcatgcaaagaagaatatgtaaaccaaaccgctttcatgat---tattacatttacatgataataaaagtaaact 41610920  T
Q  120 tgagaagagaacttacaactagcattgactaaactttgaatttattcatnnnnnnnnnnnnnnncagaactatttttattgatttctgggtatg--tata 217  Q
    |  |||||||  |||||||| ||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||  ||||    
T  41610919 t--gaagaga--ttacaacttgcattgactaaactttgaatttattcat---aaagaaaaaaaacagaactatttttattgatttctgggtatgcatata 41610827  T
Q  218 aattcatggatggattatagtagtattgatatttcttcatctc 260  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  41610826 aattcatggatgaattatagtagttttgatatttcttcatctc 41610784  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 31559485 - 31559423
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaagaagaatatgtaaaccaatctgctttcat 82  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||    
T  31559485 atgcacaaggatatgtaagtgcctatcatgcaaagaagaatatgtaaaccaatctactttcat 31559423  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 31559337 - 31559274
Alignment:
Q  201 atttctgggtatg--tataaattcatggatggattatagtagtattgatatttcttcatctctc 262  Q
    |||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31559337 atttctgggtatgcatataaatccatggatggattataggagtattgatatttcttcatctctc 31559274  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 31891163 - 31891257
Alignment:
Q  47 atgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgagaagagaacttacaactag 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  31891163 atgcaaagaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaacttgaagagagaacttacaactag 31891257  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 45389928 - 45389989
Alignment:
Q  201 atttctgggtatgtata--aattcatggatggattatagtagtattgatatttcttcatctc 260  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  45389928 atttctgggtatgcatacaaattcatggatggattatagtagtattgatatttcttcatctc 45389989  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 22683962 - 22684086
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaaa--gaagaatatgtaaaccaatctgctttcatgatttattttacatttacatgataataaaagtaaa 117  Q
    |||||||||||||||||||||  ||||||| ||   |||||||||||||||||||||||||||||||||| |      || | || |||| |||||||||    
T  22683962 atgcacaaggatatataagtgactgtcatgaaacatgaagaatatgtaaaccaatctgctttcatgattttt------ttcaaataataagaaaagtaaa 22684055  T
Q  118 cttgagaagagaacttacaactagcattgac 148  Q
     ||||  ||| ||||||||||||||||||||    
T  22684056 tttgaagagataacttacaactagcattgac 22684086  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 22695370 - 22695444
Alignment:
Q  20 atgcacaaggatatataagtgcttgtcatgcaa----agaagaatatgtaaaccaatctgctttcatgatttatt 90  Q
    |||||||||||||||||||||| | ||||| ||    ||||||||||||||||| || |||||||||||||||||    
T  22695370 atgcacaaggatatataagtgcctatcatgaaacatgagaagaatatgtaaacctatatgctttcatgatttatt 22695444  T

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