View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_63 (Length: 267)
Name: NF10129_low_63
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 42899309 - 42899433
Alignment:
| Q |
19 |
gttcacactttagctagaaaaccagagatccatccatccacgaaaacaaaatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcat |
118 |
Q |
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| T |
42899309 |
gttcacactttagctagaaaaccagagatccatccatccacgaaaacaacatagaaacactgatcacaactgggcggaaaacgcagacggacttgctcat |
42899408 |
T |
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| Q |
119 |
cgggcgcggttaacagtgagttcaa |
143 |
Q |
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| T |
42899409 |
cgggcgcggttaacagtgagttcaa |
42899433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 42899474 - 42899551
Alignment:
| Q |
184 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatctcac |
261 |
Q |
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| T |
42899474 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcac |
42899551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 19386543 - 19386499
Alignment:
| Q |
76 |
cactgatcacaactgggcggaaaacgcagacggacttgctcatcg |
120 |
Q |
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| T |
19386543 |
cactgatctcaactgcccggaaaacgcagacgaacttgctcatcg |
19386499 |
T |
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