View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_64 (Length: 267)

Name: NF10129_low_64
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_64
NF10129_low_64
[»] chr5 (20 HSPs)
chr5 (1-131)||(9399488-9399620)
chr5 (130-234)||(9399667-9399771)
chr5 (1-66)||(21100625-21100691)
chr5 (5-66)||(21199890-21199952)
chr5 (1-66)||(22000902-22000968)
chr5 (1-66)||(31487404-31487470)
chr5 (1-66)||(6498512-6498576)
chr5 (11-65)||(27276602-27276657)
chr5 (1-57)||(23413851-23413908)
chr5 (1-57)||(7746571-7746627)
chr5 (1-57)||(21076058-21076114)
chr5 (4-66)||(3246339-3246402)
chr5 (4-55)||(15516176-15516227)
chr5 (5-66)||(35932885-35932948)
chr5 (1-66)||(90309-90374)
chr5 (1-66)||(37395363-37395429)
chr5 (5-46)||(31146482-31146523)
chr5 (11-66)||(26120704-26120759)
chr5 (4-66)||(30116751-30116815)
chr5 (11-66)||(31589879-31589935)
[»] chr8 (19 HSPs)
chr8 (1-66)||(17541383-17541449)
chr8 (1-66)||(17007501-17007567)
chr8 (1-66)||(18676848-18676914)
chr8 (1-66)||(25163262-25163328)
chr8 (4-57)||(36104546-36104599)
chr8 (27-66)||(22707605-22707644)
chr8 (9-66)||(13431520-13431578)
chr8 (1-66)||(30422324-30422390)
chr8 (1-66)||(45539378-45539444)
chr8 (4-57)||(6406962-6407015)
chr8 (11-66)||(1210604-1210660)
chr8 (1-57)||(18122026-18122082)
chr8 (5-66)||(43644074-43644136)
chr8 (17-66)||(43773309-43773359)
chr8 (5-46)||(18771907-18771948)
chr8 (4-44)||(12758639-12758679)
chr8 (11-66)||(17287067-17287123)
chr8 (1-37)||(21932096-21932132)
chr8 (11-66)||(40846308-40846364)
[»] chr6 (24 HSPs)
chr6 (1-66)||(14101331-14101397)
chr6 (1-66)||(15301414-15301480)
chr6 (11-66)||(15551236-15551292)
chr6 (1-66)||(10631332-10631399)
chr6 (1-66)||(15532517-15532584)
chr6 (4-66)||(32543459-32543522)
chr6 (1-66)||(13601363-13601429)
chr6 (16-65)||(32335030-32335080)
chr6 (4-57)||(16332936-16332989)
chr6 (3-65)||(16528511-16528575)
chr6 (1-57)||(19085338-19085394)
chr6 (9-57)||(26941612-26941660)
chr6 (1-44)||(14733002-14733045)
chr6 (1-66)||(17380758-17380825)
chr6 (1-66)||(21624287-21624354)
chr6 (1-66)||(13435081-13435147)
chr6 (4-66)||(21617451-21617513)
chr6 (1-66)||(22801340-22801405)
chr6 (17-66)||(26588795-26588845)
chr6 (11-66)||(15395556-15395613)
chr6 (18-66)||(19875068-19875117)
chr6 (17-65)||(30372574-30372623)
chr6 (11-66)||(24398049-24398105)
chr6 (11-66)||(26184987-26185043)
[»] scaffold0084 (2 HSPs)
scaffold0084 (1-66)||(31787-31853)
scaffold0084 (1-57)||(48523-48580)
[»] scaffold0022 (2 HSPs)
scaffold0022 (1-66)||(36627-36693)
scaffold0022 (1-66)||(134687-134753)
[»] chr7 (27 HSPs)
chr7 (1-66)||(4493740-4493806)
chr7 (1-66)||(2499224-2499290)
chr7 (1-66)||(10884066-10884132)
chr7 (1-66)||(33604100-33604166)
chr7 (2-66)||(13027848-13027913)
chr7 (1-57)||(23280872-23280929)
chr7 (3-66)||(11792066-11792130)
chr7 (1-66)||(13259339-13259405)
chr7 (1-66)||(16557506-16557572)
chr7 (1-66)||(16608090-16608156)
chr7 (1-65)||(13261571-13261636)
chr7 (4-57)||(15705392-15705445)
chr7 (1-57)||(16315433-16315490)
chr7 (1-66)||(21691618-21691686)
chr7 (4-66)||(1292248-1292312)
chr7 (5-57)||(13902553-13902605)
chr7 (1-66)||(5001758-5001825)
chr7 (16-66)||(9802280-9802330)
chr7 (1-44)||(13645670-13645713)
chr7 (1-44)||(13731572-13731615)
chr7 (1-66)||(30025129-30025196)
chr7 (5-66)||(39285439-39285502)
chr7 (3-57)||(12367655-12367709)
chr7 (1-43)||(13302081-13302123)
chr7 (1-66)||(33692619-33692685)
chr7 (11-66)||(12223314-12223371)
chr7 (8-66)||(32265612-32265672)
[»] chr3 (35 HSPs)
chr3 (2-60)||(13823275-13823333)
chr3 (1-66)||(28581293-28581359)
chr3 (5-66)||(31302548-31302609)
chr3 (1-66)||(12963979-12964045)
chr3 (1-66)||(14954608-14954674)
chr3 (1-66)||(15902394-15902459)
chr3 (1-66)||(19889832-19889898)
chr3 (1-57)||(17239822-17239878)
chr3 (4-66)||(3237892-3237955)
chr3 (1-44)||(17667591-17667634)
chr3 (1-66)||(1241968-1242034)
chr3 (1-66)||(6089926-6089992)
chr3 (1-66)||(12727129-12727195)
chr3 (1-66)||(49554403-49554469)
chr3 (1-66)||(52919623-52919688)
chr3 (4-57)||(21639177-21639230)
chr3 (4-66)||(29854608-29854672)
chr3 (4-66)||(40850175-40850239)
chr3 (1-44)||(13781479-13781522)
chr3 (1-44)||(20628355-20628398)
chr3 (4-66)||(23539121-23539184)
chr3 (1-44)||(29952330-29952373)
chr3 (1-44)||(30001484-30001527)
chr3 (2-67)||(2560382-2560448)
chr3 (6-66)||(12967512-12967574)
chr3 (5-66)||(19250285-19250347)
chr3 (1-66)||(19885971-19886037)
chr3 (1-66)||(41494201-41494266)
chr3 (3-66)||(14393890-14393955)
chr3 (4-57)||(30055072-30055125)
chr3 (1-57)||(49643657-49643714)
chr3 (4-57)||(49669381-49669434)
chr3 (3-66)||(11189192-11189255)
chr3 (4-44)||(22465376-22465416)
chr3 (1-57)||(38178538-38178594)
[»] chr1 (22 HSPs)
chr1 (3-66)||(32786757-32786821)
chr1 (5-57)||(17025821-17025873)
chr1 (4-66)||(7308987-7309050)
chr1 (5-66)||(12625367-12625429)
chr1 (1-66)||(14294099-14294163)
chr1 (1-66)||(22153022-22153088)
chr1 (1-66)||(30892261-30892327)
chr1 (1-65)||(1899545-1899609)
chr1 (1-66)||(20959847-20959910)
chr1 (1-57)||(33257185-33257241)
chr1 (1-57)||(33277357-33277413)
chr1 (4-66)||(48571071-48571134)
chr1 (1-66)||(12283591-12283656)
chr1 (4-57)||(44824572-44824625)
chr1 (4-57)||(46088199-46088252)
chr1 (1-45)||(2833874-2833918)
chr1 (11-66)||(9345975-9346031)
chr1 (4-44)||(21121871-21121911)
chr1 (4-44)||(21205676-21205716)
chr1 (4-44)||(21215491-21215531)
chr1 (11-66)||(27857982-27858038)
chr1 (1-57)||(38281570-38281625)
[»] scaffold0471 (1 HSPs)
scaffold0471 (4-66)||(2652-2715)
[»] chr4 (28 HSPs)
chr4 (4-66)||(19611224-19611287)
chr4 (5-66)||(40859901-40859963)
chr4 (1-66)||(16631632-16631699)
chr4 (17-66)||(13692994-13693044)
chr4 (5-66)||(37436383-37436444)
chr4 (8-57)||(6640896-6640945)
chr4 (1-42)||(23120756-23120797)
chr4 (1-57)||(12599959-12600015)
chr4 (4-66)||(17399531-17399595)
chr4 (11-66)||(18773283-18773339)
chr4 (1-57)||(54679065-54679121)
chr4 (8-66)||(8686296-8686352)
chr4 (3-66)||(10072080-10072148)
chr4 (1-66)||(14605755-14605822)
chr4 (1-44)||(19883910-19883953)
chr4 (4-57)||(3106267-3106318)
chr4 (3-57)||(15134923-15134977)
chr4 (1-35)||(19665593-19665627)
chr4 (1-66)||(22676409-22676474)
chr4 (5-66)||(41115665-41115727)
chr4 (1-65)||(56033722-56033788)
chr4 (4-57)||(15560474-15560527)
chr4 (11-66)||(16325353-16325410)
chr4 (3-44)||(19621841-19621882)
chr4 (1-66)||(23749716-23749786)
chr4 (11-66)||(13890031-13890087)
chr4 (17-57)||(38513117-38513157)
chr4 (1-57)||(55379516-55379572)
[»] scaffold1657 (1 HSPs)
scaffold1657 (5-66)||(1015-1077)
[»] chr2 (25 HSPs)
chr2 (9-66)||(19539648-19539706)
chr2 (1-66)||(40780505-40780571)
chr2 (1-65)||(20569587-20569652)
chr2 (1-66)||(25188600-25188664)
chr2 (5-57)||(22782473-22782525)
chr2 (1-66)||(22257384-22257451)
chr2 (1-66)||(22455797-22455864)
chr2 (1-66)||(24575227-24575294)
chr2 (1-66)||(27294686-27294753)
chr2 (8-66)||(28551765-28551824)
chr2 (1-66)||(17964141-17964207)
chr2 (1-66)||(24851510-24851576)
chr2 (3-57)||(25828360-25828414)
chr2 (1-66)||(28702062-28702128)
chr2 (5-66)||(31328815-31328877)
chr2 (5-66)||(31335536-31335598)
chr2 (1-66)||(39038478-39038544)
chr2 (4-66)||(44839630-44839692)
chr2 (1-66)||(45087835-45087901)
chr2 (5-57)||(16494552-16494604)
chr2 (11-66)||(22790084-22790140)
chr2 (11-66)||(22797605-22797661)
chr2 (1-44)||(18377061-18377104)
chr2 (1-66)||(24376313-24376380)
chr2 (1-43)||(10010588-10010630)
[»] scaffold0488 (1 HSPs)
scaffold0488 (4-57)||(11407-11460)
[»] scaffold0146 (1 HSPs)
scaffold0146 (1-57)||(14322-14378)
[»] scaffold0028 (1 HSPs)
scaffold0028 (5-57)||(80572-80623)
[»] scaffold0315 (1 HSPs)
scaffold0315 (1-66)||(7867-7933)
[»] scaffold0205 (1 HSPs)
scaffold0205 (1-66)||(799-865)
[»] scaffold0081 (1 HSPs)
scaffold0081 (5-66)||(13192-13254)
[»] scaffold0439 (1 HSPs)
scaffold0439 (4-57)||(7558-7611)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-46)||(20312-20357)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-45)||(9186-9230)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-57)||(518-574)
[»] scaffold0056 (1 HSPs)
scaffold0056 (4-66)||(26499-26563)
[»] scaffold0530 (1 HSPs)
scaffold0530 (1-44)||(2861-2904)
[»] scaffold0275 (1 HSPs)
scaffold0275 (4-66)||(23825-23888)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-66)||(818-885)
[»] scaffold0161 (2 HSPs)
scaffold0161 (1-44)||(10955-10998)
scaffold0161 (1-44)||(15619-15662)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-66)||(50481-50548)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-66)||(211556-211623)
[»] scaffold0859 (1 HSPs)
scaffold0859 (1-66)||(2167-2233)
[»] scaffold0364 (1 HSPs)
scaffold0364 (16-65)||(5372-5422)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-69)||(102749-102819)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-66)||(83495-83560)
[»] scaffold0004 (2 HSPs)
scaffold0004 (1-66)||(219437-219503)
scaffold0004 (4-57)||(378401-378455)
[»] scaffold0567 (1 HSPs)
scaffold0567 (1-66)||(9099-9162)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-66)||(18232-18299)
[»] scaffold0045 (1 HSPs)
scaffold0045 (11-66)||(88456-88512)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 9399488 - 9399620
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccc-cctttcttgtgtttt-ctcaccttcggtcgggagatcattgaatcaagataaagatt 98  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||    
T  9399488 agcttaggagaaaatgaagaaaaaactaacacaattcaaccctcctttcttgtgtttttctcaccttcagtcgggaggtcattgaatcaagataaggatt 9399587  T
Q  99 caaagtggcttcgagcatatgattatgtgtgac 131  Q
    |||||||||||||||||||||||||||||||||    
T  9399588 caaagtggcttcgagcatatgattatgtgtgac 9399620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 9399667 - 9399771
Alignment:
Q  130 accttattaaatcttaattgtaatcgcagactgagtgtctagaaaattgaaccgttgctcgattcgaaacaaatatataaaccaaagttgaaactaaaat 229  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9399667 accttattaaatcttaattgtaatcgcagactgagtgtgtagaaaattgaacctttgctcgatccgaaacaaatatataaaccaaagttgaaactaaaat 9399766  T
Q  230 ctatc 234  Q
    |||||    
T  9399767 ctatc 9399771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21100625 - 21100691
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  21100625 agcttaggagaaaatgaagaaaaaactaacacaattcaaccccccttcttgtgcttttctcaccttc 21100691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 21199890 - 21199952
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  21199890 taggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 21199952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22000902 - 22000968
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||| | ||||||| |||||||| |||||||||||||    
T  22000902 agcttaggagaaaacgaagaaaaagctaacacaactcaaccccccttcttgtgtttttctcaccttc 22000968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31487470 - 31487404
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  31487470 agcttaggagaaaacgaagaaaaaaccaacacaattcaaccccccttcttgtgtttttctcaccttc 31487404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6498576 - 6498512
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt-ctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||  ||||||||||| |||||||||    
T  6498576 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc--tcttgtgttttactcaccttc 6498512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 27276602 - 27276657
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  27276602 aaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcacctt 27276657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23413851 - 23413908
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| ||| |||| ||||||||||||    
T  23413851 agcttaggagaaaacgaagaaaaagctaacacaattcaactccccattcttgtgtttt 23413908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7746571 - 7746627
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| || |||||||||    
T  7746571 agcttaggagaaaacgaagaaaaagcaaacacaattcaaccccccttattgtgtttt 7746627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21076058 - 21076114
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| |||||| |||| ||||| | ||||||||||||    
T  21076058 agcttaggagaaaacgaagaaaaagctaacataattcaaccctccttcttgtgtttt 21076114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 3246339 - 3246402
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  3246339 ttaggagaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttc 3246402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 15516227 - 15516176
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtt 55  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||    
T  15516227 ttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtt 15516176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 35932885 - 35932948
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaacc-ccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| ||||||||||| |||| ||| |||||||| |||||||||||||    
T  35932885 taggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttc 35932948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 90309 - 90374
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| || || | |||||||| |||||||||||||    
T  90309 agcttaggagaaaacgaagaaaaagctaacacaattcaa-cctcattcttgtgtttttctcaccttc 90374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37395429 - 37395363
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||| | |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  37395429 agcttaggagaagaagaagaaaaagtaaacacaattcaaccccccttcttgtgtttttctcaccttc 37395363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 31146482 - 31146523
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctt 46  Q
    |||||||||| ||||||||| ||||||||||| |||||||||    
T  31146482 taggagaaaaagaagaaaaagctaacacaattcaaccccctt 31146523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 26120704 - 26120759
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  26120704 aaaaagaagaaaaagctaacacaattcaaccccc-ttcttgtgtttttctcaccttc 26120759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 30116751 - 30116815
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| | |||| ||||||| ||||| |||||||| |||||||||||||    
T  30116751 ttaggagaaaaagaagaaaaagccaacagaatttaacccccccttcttgtgtttttctcaccttc 30116815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 31589879 - 31589935
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||||| || ||||| |||||||||||||    
T  31589879 aaaaagaagaaaaagctaacacaattcaaccccccttattgtgtttttctcaccttc 31589935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17541383 - 17541449
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  17541383 agcttaggagaaaatgaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttc 17541449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17007567 - 17007501
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  17007567 agcttaggagaaaacgaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttc 17007501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18676914 - 18676848
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||  |||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  18676914 agcttaggagaatttgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 18676848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25163328 - 25163262
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||||| || |||||||||||||    
T  25163328 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttatgtttttctcaccttc 25163262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 36104599 - 36104546
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||    
T  36104599 ttaggagaaaatgaagaaaaagccaacacaattcaaccccccttcttgtgtttt 36104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 22707644 - 22707605
Alignment:
Q  27 taacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  22707644 taacacaatttaaccccccttcttgtgttttctcaccttc 22707605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 13431520 - 13431578
Alignment:
Q  9 agaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  13431520 agaaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 13431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30422324 - 30422390
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||  |||||||| |||||||||||||    
T  30422324 agcttaggagaaaaagaagaaaaagcaaacacaattcaacccctcttcttgtgtttttctcaccttc 30422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45539378 - 45539444
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  45539378 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttc 45539444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 6407015 - 6406962
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  6407015 ttaggagaaaaagaagaaaaaaccaacacaattcaacccccattcttgtgtttt 6406962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 1210604 - 1210660
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  1210604 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 1210660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18122026 - 18122082
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||| ||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  18122026 agctaaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttt 18122082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 43644136 - 43644074
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||| |||||||| ||||| ||||||||||| ||||||| ||||| || |||||||||||||    
T  43644136 taggaaaaaatgaaaaaaaagctaacacaattcaaccccccttcttatgtttttctcaccttc 43644074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 43773359 - 43773309
Alignment:
Q  17 aagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  43773359 aagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 43773309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 18771948 - 18771907
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctt 46  Q
    |||||||| ||||||||||| ||||||||||| |||||||||    
T  18771948 taggagaagatgaagaaaaagctaacacaattcaaccccctt 18771907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 12758639 - 12758679
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  12758639 ttaggagaaaacgaagaaaaagctaacacaattcaaccccc 12758679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 17287067 - 17287123
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  17287067 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 17287123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21932132 - 21932096
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaattt 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  21932132 agcttaggagaaaaagaagaaaaagctaacacaattt 21932096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 40846308 - 40846364
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgt-gttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||  |||||||||||||    
T  40846308 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtatttttctcaccttc 40846364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14101331 - 14101397
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  14101331 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccctttcttgtgtttttctcaccttc 14101397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15301480 - 15301414
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  15301480 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 15301414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 15551292 - 15551236
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  15551292 aaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttc 15551236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10631399 - 10631332
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccc-cctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||| || |||||||| |||||||||||||    
T  10631399 agcttaggagaaaaagaagaaaaagctaacacaattcaaccctccattcttgtgtttttctcaccttc 10631332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15532517 - 15532584
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccct-ttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| |||||| | |||||||| |||||||||||||    
T  15532517 agcttaggagaaaaagaagaaaaagctaacacaattcaaccccttcttcttgtgtttttctcaccttc 15532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 32543522 - 32543459
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  32543522 ttaggagaaaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttc 32543459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13601429 - 13601363
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtt-ttctcaccttc 66  Q
    ||||||||||||||  |||||||| ||||||| ||| ||||||| |||||||||| |||||||||||    
T  13601429 agcttaggagaaaactaagaaaaagctaacacgattcaaccccccttcttgtgttattctcaccttc 13601363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32335080 - 32335030
Alignment:
Q  16 gaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  32335080 gaagaaaaagctaacacaattcaaccccctttcttgtgtttttctcacctt 32335030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 16332989 - 16332936
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  16332989 ttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttt 16332936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16528575 - 16528511
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcacctt 65  Q
    |||||||||||| ||||||||| ||||||||||| || ||||| |||||||| ||||||||||||    
T  16528575 cttaggagaaaacgaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcacctt 16528511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19085394 - 19085338
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||| ||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  19085394 agcttatgagaaaacgaagaaaaagccaacacaattcaaccccccttcttgtgtttt 19085338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 26941660 - 26941612
Alignment:
Q  9 agaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  26941660 agaaaacgaagaaaaagctaacacaattcaactccctttcttgtgtttt 26941612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14733002 - 14733045
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  14733002 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 14733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17380825 - 17380758
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| || ||||| |||||||| |||||||||||||    
T  17380825 agcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttc 17380758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21624354 - 21624287
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| || ||||| |||||||| |||||||||||||    
T  21624354 agcttaggagaaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttc 21624287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13435147 - 13435081
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttg-tgttttctcaccttc 66  Q
    ||||||||||||||  |||||||| | ||||||||| ||||||| |||||| | |||||||||||||    
T  13435147 agcttaggagaaaacaaagaaaaagcaaacacaattcaaccccccttcttgtttttttctcaccttc 13435081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 21617513 - 21617451
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    ||||||||||| ||||||| | | ||||||||| ||||||||||  ||| |||||||||||||    
T  21617513 ttaggagaaaaagaagaaacagccaacacaattcaacccccttttgtgttttttctcaccttc 21617451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22801405 - 22801340
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||| |||||  |||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  22801405 agcttaggtgaaaaataagaaaaagctaacacaattcaaccccc-ttcttgtgtttttctcaccttc 22801340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 26588845 - 26588795
Alignment:
Q  17 aagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  26588845 aagaaaaagctaacacaattcaacccccattcttgtgtttttctcaccttc 26588795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 15395556 - 15395613
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccct-ttcttgtgtttt-ctcaccttc 66  Q
    |||| ||||||||| ||||||||||| |||||||| |||||||||||| |||||||||    
T  15395556 aaaaagaagaaaaagctaacacaattcaaccccctcttcttgtgttttgctcaccttc 15395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 19875117 - 19875068
Alignment:
Q  18 agaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  19875117 agaaaaatctaacacaattcaaccccccttcatgtgtttttctcaccttc 19875068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 30372623 - 30372574
Alignment:
Q  17 aagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    ||||||||  |||||||||| |||||||||||||||| ||||||||||||    
T  30372623 aagaaaaagttaacacaattcaaccccctttcttgtgtttttctcacctt 30372574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 24398105 - 24398049
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt-ctcaccttc 66  Q
    |||| ||||||||||||||||||||| ||| ||| || ||||||||| |||||||||    
T  24398105 aaaaagaagaaaaatctaacacaattcaactccccttattgtgttttactcaccttc 24398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 26185043 - 26184987
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| |||||||||| |||||||||| ||||| | |||||||| |||||||||||||    
T  26185043 aaaaagaagaaaaatttaacacaattcaacccacattcttgtgtttttctcaccttc 26184987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31853 - 31787
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  31853 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 31787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48580 - 48523
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtgtttt 57  Q
    |||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||    
T  48580 agcttaggagaaaatgaagaaaaagctaacacaattcaacccccccttcttgtgtttt 48523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36693 - 36627
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  36693 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 36627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 134753 - 134687
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  134753 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 134687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4493806 - 4493740
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  4493806 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 4493740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2499290 - 2499224
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||||||  |||||||||| || |||| |||||||| |||||||||||||    
T  2499290 agcttaggagaaaatgaagaaaaagttaacacaattcaatcccccttcttgtgtttttctcaccttc 2499224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10884066 - 10884132
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  10884066 agcttaggagaaaacaaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 10884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33604166 - 33604100
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  33604166 agcttaggagaaaacgaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 33604100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 13027848 - 13027913
Alignment:
Q  2 gcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||||| | ||||||||| |||| || |||||||| |||||||||||||    
T  13027848 gcttaggagaaaatgaagaaaaagcaaacacaattcaacctcccttcttgtgtttttctcaccttc 13027913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23280872 - 23280929
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatt-taaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||    
T  23280872 agcttaggagaaaaagaagaaaaatctaacacaattctacccccccttcttgtgtttt 23280929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11792130 - 11792066
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||| |||||||||  |||||||||| ||||||| |||||||| |||||||||||||    
T  11792130 cttaggagaaaacgaagaaaaagataacacaattcaaccccccttcttgtgtttttctcaccttc 11792066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13259339 - 13259405
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  13259339 agcttaggagaaaacgaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttc 13259405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16557506 - 16557572
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| || ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  16557506 agcttaggagataaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 16557572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16608156 - 16608090
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| || ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  16608156 agcttaggagataaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 16608090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13261571 - 13261636
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| |||||||| ||||||||||||    
T  13261571 agcttaggagaaaacgaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcacctt 13261636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 15705392 - 15705445
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  15705392 ttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttt 15705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16315433 - 16315490
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaacccc-ctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| |||||| | ||||||||||||    
T  16315433 agcttaggagaaaacgaagaaaaacctaacacaattcaacccctccttcttgtgtttt 16315490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21691686 - 21691618
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa--ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||| ||||||| | ||||||||| ||  |||||||||||||| |||||||||||||    
T  21691686 agcttaggagaaaatgtagaaaaagccaacacaattcaaccccccctttcttgtgtttttctcaccttc 21691618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 1292312 - 1292248
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaacc-ccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||| |||||||| |||||||||||||    
T  1292312 ttaggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttc 1292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 13902553 - 13902605
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||| ||||||||| ||||||||||| |||| || ||||||||||||    
T  13902553 taggagaaaacgaagaaaaagctaacacaattcaacctcccttcttgtgtttt 13902605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5001758 - 5001825
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaacc-ccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| |||||| ||||||||| ||  |||||||| |||||||||||||    
T  5001758 agcttaggagaaaacgaagaaaaagctaacataatttaacctccacttcttgtgtttttctcaccttc 5001825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 9802330 - 9802280
Alignment:
Q  16 gaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  9802330 gaagaaaaatctaacacaattcaaccccc-ttcttgtgtttttctcaccttc 9802280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13645713 - 13645670
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  13645713 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 13645670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13731572 - 13731615
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  13731572 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 13731615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30025196 - 30025129
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| || ||||| |||||||| |||||||||||||    
T  30025196 agcttaggagaaaacgaagaaaaagcaaacacaattcaacccccccttcttgtgtttttctcaccttc 30025129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 39285439 - 39285502
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||  |||||||||| || ||||| |||||||| |||||||||||||    
T  39285439 taggagaaaatgaagaaaaaagtaacacaattcaatccccccttcttgtgtttttctcaccttc 39285502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 12367655 - 12367709
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||| |||||||||  |||||||||| |||||||  |||||||||||    
T  12367655 cttaggagaaaacgaagaaaaagataacacaattcaaccccccgtcttgtgtttt 12367709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13302123 - 13302081
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaacccc 43  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||    
T  13302123 agcttaggagaaaacgaagaaaaaactaacacaattcaacccc 13302081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33692619 - 33692685
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||  |||||||||| ||| ||| || ||||| |||||||||||||    
T  33692619 agcttaggagaaaaggaagaaaaagttaacacaattcaactcccctttttgtgtttttctcaccttc 33692685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 12223314 - 12223371
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccc-cctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||||||||||||||| ||||| || |||||||| |||||||||||||    
T  12223314 aaaaagaagaaaaatctaacacaattcaaccctccattcttgtgtttttctcaccttc 12223371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 32265612 - 32265672
Alignment:
Q  8 gagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgtg-ttttctcaccttc 66  Q
    ||||||| ||||||||| ||||||||||| ||| |||| |||||||| |||||||||||||    
T  32265612 gagaaaaagaagaaaaacctaacacaattcaactcccccttcttgtgtttttctcaccttc 32265672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13823333 - 13823275
Alignment:
Q  2 gcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctc 60  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  13823333 gcttaggagaaaaagaagaaaaatccaacacaattcaaccccccttcttgtgttttctc 13823275  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28581359 - 28581293
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  28581359 agcttaggagaaaaagaagaaaaagctaacacaattcaacccccattcttgtgtttttctcaccttc 28581293  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 31302609 - 31302548
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    |||||||||| ||||||||| | ||||||||| ||||||| |||||||||||||||||||||    
T  31302609 taggagaaaaagaagaaaaaaccaacacaattcaaccccccttcttgtgttttctcaccttc 31302548  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12963979 - 12964045
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  12963979 agctgaggagaaaatgaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttc 12964045  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14954674 - 14954608
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  14954674 agcttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 14954608  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15902459 - 15902394
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  15902459 agcttaggagaaaaagaagaaaaagctaacacaattcaaccccc-ttcttgtgtttttctcaccttc 15902394  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19889832 - 19889898
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| |||||| |||| ||||||| |||||||| |||||||||||||    
T  19889832 agcttaggagaaaacgaagaaaaagctaacaaaattcaaccccccttcttgtgtttttctcaccttc 19889898  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17239822 - 17239878
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||    
T  17239822 agcttaggagaaaacgaagaaaaagctaacacaattcaacccccattcttatgtttt 17239878  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 3237955 - 3237892
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| |||||||| ||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  3237955 ttagaagaaaatgtagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 3237892  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17667634 - 17667591
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||||||||||||| ||||||||||| |||||||    
T  17667634 agcttaggagaaaatgaagaaaaaactaacacaattcaaccccc 17667591  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1241968 - 1242034
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||  |||||||| |||||||||||||    
T  1241968 agcttaggagaaaaagaagaaaaaaccaacacaattcaaccccacttcttgtgtttttctcaccttc 1242034  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6089992 - 6089926
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| || |||||| ||||||||||| |||| || |||||||| |||||||||||||    
T  6089992 agcttaggagaaaacgatgaaaaagctaacacaattcaacctcccttcttgtgtttttctcaccttc 6089926  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12727129 - 12727195
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||| ||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  12727129 agcttaggagaaaacgaaaaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttc 12727195  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49554403 - 49554469
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||| ||| |||| |||||||||||||    
T  49554403 agcttaggagaaaaagaagaaaaaaccaacacaattcaaccccccttcgtgtgtttttctcaccttc 49554469  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 52919688 - 52919623
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| | ||||| |||||||| |||||||||||||    
T  52919688 agcttaggagaaaacgaagaaaaaactaacacaattcagccccc-ttcttgtgtttttctcaccttc 52919623  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 21639177 - 21639230
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  21639177 ttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttt 21639230  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 29854672 - 29854608
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaacc-ccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||| |||||||| |||||||||||||    
T  29854672 ttaggagaaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttc 29854608  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 40850239 - 40850175
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  40850239 ttaggagaaaaagaagaaaaaactaacacaattcaaccccccgttcttgtgtttttctcaccttc 40850175  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13781479 - 13781522
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  13781479 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 13781522  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20628355 - 20628398
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  20628355 agcttaggagaaaaagaagaaaaagctaacacaattcaaccccc 20628398  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 23539121 - 23539184
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||| |||| ||||||||| ||||||||||| |||| || |||||||| |||||||||||||    
T  23539121 ttaggaaaaaacgaagaaaaaactaacacaattcaacctcccttcttgtgtttttctcaccttc 23539184  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29952330 - 29952373
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  29952330 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 29952373  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30001484 - 30001527
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  30001484 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 30001527  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 2560448 - 2560382
Alignment:
Q  2 gcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttcg 67  Q
    ||||||||||| | |||||||||   ||||||||| ||||||| |||||||| ||||||||||||||    
T  2560448 gcttaggagaagacgaagaaaaagtaaacacaattcaaccccccttcttgtgtttttctcaccttcg 2560382  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 12967574 - 12967512
Alignment:
Q  6 aggagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||| ||||||||| ||||||||||| ||| |||| |||||||| |||||||||||||    
T  12967574 aggagaaaacgaagaaaaagctaacacaattcaactcccccttcttgtgtttttctcaccttc 12967512  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 19250285 - 19250347
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| |||| |||| ||||||||||| ||||||  |||||||| |||||||||||||    
T  19250285 taggagaaaacgaagtaaaagctaacacaattcaacccctcttcttgtgtttttctcaccttc 19250347  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19885971 - 19886037
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||  ||||||| || ||||||| || ||||| |||||||||||||    
T  19885971 agcttaggagaaaacgaagaaaaagataacacatttcaacccccctttttgtgtttttctcaccttc 19886037  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41494266 - 41494201
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt-ctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||  |||||||||||| |||||||||    
T  41494266 agcttaggagaaaa-gaagaaaaagccaacacaattcaaccccgcttcttgtgttttgctcaccttc 41494201  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 14393890 - 14393955
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgt-gttttctcaccttc 66  Q
    |||||||||||| ||||||||| ||||||||||| ||| |||| |||||||  |||||||||||||    
T  14393890 cttaggagaaaacgaagaaaaagctaacacaattcaacgcccccttcttgtatttttctcaccttc 14393955  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 30055072 - 30055125
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||| || |||||||||    
T  30055072 ttaggagaaaaagaaaaaaaaactaacacaattcaacccccctttttgtgtttt 30055125  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 49643657 - 49643714
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaacc-ccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| |||| ||  ||||||||||||    
T  49643657 agcttaggagaaaacgaagaaaaagctaacacaattcaacctccgcttcttgtgtttt 49643714  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 49669381 - 49669434
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| |||| || ||||||||||||    
T  49669381 ttaggagaaaaagaagaaaaaacgaacacaattcaacctcccttcttgtgtttt 49669434  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11189255 - 11189192
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||| ||||||||| | ||||||||| ||| ||| |||||||| |||||||||||||    
T  11189255 cttaggagaaaaagaagaaaaaaccaacacaattcaacaccc-ttcttgtgtttttctcaccttc 11189192  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 22465376 - 22465416
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  22465376 ttaggagaaaaggaagaaaaagctaacacaattcaaccccc 22465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38178538 - 38178594
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| | ||||||||| ||||| | ||||| ||||||    
T  38178538 agcttaggagaaaaagaagaaaaagccaacacaattcaaccctccttcttatgtttt 38178594  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 32786757 - 32786821
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  32786757 cttaggagaaaaagaaaaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttc 32786821  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 17025821 - 17025873
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||||||||||    
T  17025821 taggagaaaacaaagaaaaatctaacacaattcaaccccccttcttgtgtttt 17025873  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 7309050 - 7308987
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  7309050 ttaggagaaaacgaagaaaaaaccaacacaattcaaccccccttcttgtgtttttctcaccttc 7308987  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 12625367 - 12625429
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  12625367 taggagaaaacgaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttc 12625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14294099 - 14294163
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||    
T  14294099 agcttaggagaaaatgaagaaaaagcaaacacaa-ttaaccccc-ttcttgtgtttttctcaccttc 14294163  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22153088 - 22153022
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  22153088 agctaaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 22153022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30892327 - 30892261
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||| |||||  ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  30892327 agcttagaagaaatcgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 30892261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1899609 - 1899545
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcacctt 65  Q
    |||||||||||||| |||||||||   ||||||||| ||||||||||  ||| ||||||||||||    
T  1899609 agcttaggagaaaaagaagaaaaagtcaacacaattcaacccccttttgtgttttttctcacctt 1899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20959847 - 20959910
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||   |||||| |||||||||||||    
T  20959847 agcttaggagaaaacgaagaaaaaactaacacaattcaaccccc---cttgtgtttttctcaccttc 20959910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33257185 - 33257241
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||  ||||||||| ||||||||||| ||| ||| ||||||||||||    
T  33257185 agcttaggagaaagcgaagaaaaagctaacacaattcaactccccttcttgtgtttt 33257241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33277357 - 33277413
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||  ||||||||| ||||||||||| ||| ||| ||||||||||||    
T  33277357 agcttaggagaaagcgaagaaaaagctaacacaattcaactccccttcttgtgtttt 33277413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 48571071 - 48571134
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  48571071 ttaggagaaaaagaagaaaaaatcaacacaattcaacccccattcttgtgtttttctcaccttc 48571134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12283656 - 12283591
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| |||  || |||||||| |||||||||||||    
T  12283656 agcttaggagaaaacgaagaaaaagctaacacaattcaacatcc-ttcttgtgtttttctcaccttc 12283591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 44824572 - 44824625
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||  | ||||||||| ||||||| ||||||||||||    
T  44824572 ttaggagaaaaagaagaaaaggccaacacaattcaaccccccttcttgtgtttt 44824625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 46088252 - 46088199
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| | ||||||| ||||||||||| ||||| | ||||||||||||    
T  46088252 ttaggagaaaaaggagaaaaacctaacacaattcaaccctccttcttgtgtttt 46088199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2833918 - 2833874
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccct 45  Q
    |||||||||||||| ||||||||| | ||||||||| ||||||||    
T  2833918 agcttaggagaaaaagaagaaaaagccaacacaattcaaccccct 2833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9346031 - 9345975
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  9346031 aaaaagaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttc 9345975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21121871 - 21121911
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  21121871 ttaggagaaaaagaagaaaaagctaacacaattcaaccccc 21121911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21205676 - 21205716
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  21205676 ttaggagaaaaagaagaaaaagctaacacaattcaaccccc 21205716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21215491 - 21215531
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  21215491 ttaggagaaaaagaagaaaaagctaacacaattcaaccccc 21215531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 27858038 - 27857982
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  27858038 aaaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttc 27857982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38281625 - 38281570
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| | ||||||||  ||||||| ||||||||||||    
T  38281625 agcttaggagaaaaggaagaaaaagccaacacaatccaaccccc-ttcttgtgtttt 38281570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 2715 - 2652
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  2715 ttaggagaaaatgaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttc 2652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 19611224 - 19611287
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  19611224 ttaggagaaaacgaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttc 19611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 40859963 - 40859901
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  40859963 taggagaaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 40859901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16631699 - 16631632
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccct-ttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| |||||||| |||||||| |||||||||||||    
T  16631699 agcttaggagaaaaggaagaaaaaaccaacacaattcaaccccctcttcttgtgtttttctcaccttc 16631632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 13693044 - 13692994
Alignment:
Q  17 aagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  13693044 aagaaaaatctaacacaatttgaccccccttcttgtgtttttctcaccttc 13692994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 37436383 - 37436444
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||| |||||||||||||    
T  37436383 taggagaaaaagaagaaaaacc-aacacaatttaaccccccttcttgtgtttttctcaccttc 37436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 6640945 - 6640896
Alignment:
Q  8 gagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||    
T  6640945 gagaaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttt 6640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23120797 - 23120756
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccc 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  23120797 agcttaggagaaaatgaagaaaaagctaacacaattcaaccc 23120756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12600015 - 12599959
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| || |||| ||||| ||||||    
T  12600015 agcttaggagaaaacgaagaaaaagctaacacaattcaatcccccttcttatgtttt 12599959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17399531 - 17399595
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  17399531 ttaggagaaaaagaagaaaaacctaacacaattcaacccccccttcttgtgtttttctcaccttc 17399595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 18773339 - 18773283
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||| ||| |||||||||||||||| |||||||||||||    
T  18773339 aaaaagaagaaaaaactaacacgattcaaccccctttcttgtgtttttctcaccttc 18773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 54679121 - 54679065
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| ||||||||||||    
T  54679121 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttt 54679065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 8686296 - 8686352
Alignment:
Q  8 gagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    ||||||| ||||||||| | ||||||||| ||||||||  |||||||||||||||||||    
T  8686296 gagaaaacgaagaaaaagcaaacacaattcaaccccct--cttgtgttttctcaccttc 8686352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 10072148 - 10072080
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccct----ttcttgtg-ttttctcaccttc 66  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||    |||||||| |||||||||||||    
T  10072148 cttaggagaaaaagaagaaaaagctaacacaattcaaccccctccccttcttgtgtttttctcaccttc 10072080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14605755 - 14605822
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  14605755 agcttaggagaaaacgaataaaaagctaacacaattcaatccccccttcttgtgtttttctcaccttc 14605822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19883953 - 19883910
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  19883953 agcttaggagaaaaagaagaaaaaactaacacaattcaaccccc 19883910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 3106267 - 3106318
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| ||||||||||| ||||||  ||||||||||||    
T  3106267 ttaggagaaaaagaagaaaaagctaacacaattcaacccc--ttcttgtgtttt 3106318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 15134977 - 15134923
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||| ||||||| ||||||| | ||||||||||| ||||||| ||||||||||||    
T  15134977 cttaagagaaaacgaagaaataactaacacaattcaaccccccttcttgtgtttt 15134923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19665627 - 19665593
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaat 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  19665627 agcttaggagaaaacgaagaaaaatctaacacaat 19665593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22676409 - 22676474
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||| || |||||| |||||||| |||||||||||||    
T  22676409 agcttaggagaaaaagaagaaaaagccaacacaa-ttcaccccccttcttgtgtttttctcaccttc 22676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 41115665 - 41115727
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| |||||||||  |||||||||| || |||| |||||||| |||||||||||||    
T  41115665 taggagaaaacgaagaaaaagttaacacaattcaaacccccttcttgtgtttttctcaccttc 41115727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 56033788 - 56033722
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccc-cctttcttgtg-ttttctcacctt 65  Q
    |||||||||||||| ||||||||| | ||||||||| ||||| || |||||||| ||||||||||||    
T  56033788 agcttaggagaaaaagaagaaaaaaccaacacaattcaaccctccattcttgtgtttttctcacctt 56033722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 15560527 - 15560474
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||  |||||||| | ||||||||| ||||||| ||||||||||||    
T  15560527 ttaggagaaaacaaagaaaaagcaaacacaattcaaccccccttcttgtgtttt 15560474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 16325353 - 16325410
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtgttt-tctcaccttc 66  Q
    |||| ||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||    
T  16325353 aaaaagaagaaaaaactaacacaatttaacccccccttcttgtgtttatctcaccttc 16325410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 19621841 - 19621882
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||| ||||||||| ||||||||||| |||||||    
T  19621841 cttaggagaaaacgaagaaaaagctaacacaattcaaccccc 19621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23749786 - 23749716
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccct----ttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| || |||||    |||||||| |||||||||||||    
T  23749786 agcttaggagaaaacgaagaaaaagctaacacaattcaatcccctccccttcttgtgtttttctcaccttc 23749716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 13890087 - 13890031
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgt-gttttctcaccttc 66  Q
    |||| ||||||||||||||||||||| ||||||| ||||| |  |||||||||||||    
T  13890087 aaaaagaagaaaaatctaacacaattcaaccccccttcttttatttttctcaccttc 13890031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 38513157 - 38513117
Alignment:
Q  17 aagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||| ||||||||||| ||||||| ||||||||||||    
T  38513157 aagaaaaagctaacacaattcaaccccccttcttgtgtttt 38513117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55379572 - 55379516
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||||||||||| |||| || |||||||| || |||| ||| ||||||||    
T  55379572 agcttaggagaaaatgaaggaaaaactcacacaattcaaacccccttcctgtgtttt 55379516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 1077 - 1015
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt-ctcaccttc 66  Q
    |||||||||| ||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  1077 taggagaaaacgaagaaaaatcaaacacaattcaaccccccttcttgtgttttgctcaccttc 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 19539706 - 19539648
Alignment:
Q  9 agaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  19539706 agaaaatgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 19539648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40780571 - 40780505
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||| | |||||||| |||||||||||||    
T  40780571 agcttaggagaaaacgaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttc 40780505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20569587 - 20569652
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    |||||||||||||| |||||||||  |||||||||| ||||||| |||||||| ||||||||||||    
T  20569587 agcttaggagaaaacgaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcacctt 20569652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25188664 - 25188600
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||| || ||||||  ||||||||||||||||||||    
T  25188664 agcttaggagaaaacgaagaaaaagctaacacaa-ttcaccccccctcttgtgttttctcaccttc 25188600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 22782473 - 22782525
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||    
T  22782473 taggagaaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttt 22782525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22257451 - 22257384
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||| |||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  22257451 agctttggagaaaatgaagaaaaagctaacacaattgaacccccccttcttgtgtttttctcaccttc 22257384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22455797 - 22455864
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  22455797 agcttaggagaaaacgaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttc 22455864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24575294 - 24575227
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccc-cctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||||||||||||| ||||||||||| |||||  | |||||||| |||||||||||||    
T  24575294 agcttaggagaaaatgaagaaaaagctaacacaattcaacccttcattcttgtgtttttctcaccttc 24575227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27294753 - 27294686
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  27294753 agcttaggagaaaacgaagaaaaaactaacacaattcaacccccccttcttgtgtttttctcaccttc 27294686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28551765 - 28551824
Alignment:
Q  8 gagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  28551765 gagaaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttc 28551824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17964141 - 17964207
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||  |||||||||| ||||||| ||||| || |||||||||||||    
T  17964141 agcttaggagaaaacgaagaaaaagttaacacaattcaaccccccttcttttgtttttctcaccttc 17964207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24851510 - 24851576
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| | ||||||||| ||||| | |||||||| |||||||||||||    
T  24851510 agcttaggagaaaacgaagaaaaagcaaacacaattcaaccctccttcttgtgtttttctcaccttc 24851576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 25828414 - 25828360
Alignment:
Q  3 cttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||||    
T  25828414 cttaggagaaaacgaagaaaaagctaacataattcaaccccccttcttgtgtttt 25828360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28702062 - 28702128
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  28702062 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttc 28702128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 31328815 - 31328877
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  31328815 taggagaaaaagaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttc 31328877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 31335536 - 31335598
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| | ||||||||| ||||||| |||||||| |||||||||||||    
T  31335536 taggagaaaaagaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttc 31335598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39038478 - 39038544
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttg-tgttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||| ||| |||||| | |||||||||||||    
T  39038478 agcttaggagaaaacgaagaaaaagctaacacaattcaactccccttcttgtttttttctcaccttc 39038544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 44839692 - 44839630
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgttttctcaccttc 66  Q
    ||||||||||| ||||||||||| ||||||||| |||||||| |  ||| |||||||||||||    
T  44839692 ttaggagaaaaagaagaaaaatcaaacacaattcaaccccctcttgtgttttttctcaccttc 44839630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45087835 - 45087901
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| ||||||| |||||||| |||||||||||||    
T  45087835 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttc 45087901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 16494604 - 16494552
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||| ||||||||| ||||| ||||| ||||||| ||||||||||||    
T  16494604 taggagaaaaagaagaaaaagctaacccaattcaaccccccttcttgtgtttt 16494552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22790140 - 22790084
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||||||||||||||  |||||||||| ||||| |||||||||||||    
T  22790140 aaaaagaagaaaaatctaacacaatccaacccccttttttgtgtttttctcaccttc 22790084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22797661 - 22797605
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  22797661 aaaaagaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttc 22797605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18377061 - 18377104
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  18377061 agcttaggagaaaacgaagaaaaaactaacacaattcaaccccc 18377104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24376380 - 24376313
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||  |||||||||| || ||||| |||||||| |||||||||||||    
T  24376380 agcttaggagaaaacgaagaaaaacttaacacaattcaacccccccttcttgtgtttttctcaccttc 24376313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10010588 - 10010630
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaacccc 43  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  10010588 agcttaggagaaaacgaaaaaaaaactaacacaatttaacccc 10010630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 11460 - 11407
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||    
T  11460 ttaggagaaaaagaagaaaaaactaacacaattcaaccccccttcttgtgtttt 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14378 - 14322
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||    
T  14378 agcttaggagaaaacgaagaaaaagctaacacaattcaacccccattcttatgtttt 14322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 80623 - 80572
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  80623 taggagaaaacgaagaaaaagctaacacaatttaaccccc-ttcttgtgtttt 80572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7933 - 7867
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||  ||||| || |||||||||||||    
T  7933 agcttaggagaaaacgaagaaaaagctaacacaattcaacccctcttcttatgtttttctcaccttc 7867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 799 - 865
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||  |||||||||  |||||||||| ||||||| |||||||| |||||||||||||    
T  799 agcttaggagaaatagaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttc 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 13254 - 13192
Alignment:
Q  5 taggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||| ||||||||| ||||||||||| ||||||| || ||||| |||||||||||||    
T  13254 taggagaaaacgaagaaaaagctaacacaattcaacccccctttttgtgtttttctcaccttc 13192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 7558 - 7611
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    ||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||    
T  7558 ttaggagaaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttt 7611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20312 - 20357
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctt 46  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||    
T  20312 agcttaggagaaaacgaagaaaaaactaacacaattcaaccccctt 20357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9230 - 9186
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccct 45  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||||    
T  9230 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccct 9186  T

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Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 518 - 574
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtgtttt 57  Q
    |||||||||||||| ||||||||| | ||| ||||| ||||||| ||||||||||||    
T  518 agcttaggagaaaaagaagaaaaaaccaactcaattcaacccccattcttgtgtttt 574  T

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Target: scaffold0056 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 26499 - 26563
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  26499 ttaggagaaaaagaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttc 26563  T

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Target: scaffold0530 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2861 - 2904
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||    
T  2861 agcttaggagaaaacgaagaaaaagctaacacaattcaaccccc 2904  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 23888 - 23825
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    ||||||||||| ||||||||| | ||||||||| ||||| | |||||||| |||||||||||||    
T  23888 ttaggagaaaaagaagaaaaaaccaacacaattcaaccctccttcttgtgtttttctcaccttc 23825  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 885 - 818
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatt-taaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||  ||||||||||  ||||||| |||||||| |||||||||||||    
T  885 agcttaggagaaaacgaagaaaaagttaacacaattcaaaccccccttcttgtgtttttctcaccttc 818  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10955 - 10998
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||    
T  10955 agcttaggagaaaacgaagaaaaagctaacacaatataaccccc 10998  T

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Target: scaffold0161; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15619 - 15662
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccc 44  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||    
T  15619 agcttaggagaaaacgaagaaaaagctaacacaatataaccccc 15662  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50548 - 50481
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| |||||| |||| ||| |||| |||||||| |||||||||||||    
T  50548 agcttaggagaaaacgaagaaaaaactaacataattcaactcccccttcttgtgtttttctcaccttc 50481  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 211623 - 211556
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaa-ccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||    
T  211623 agcttaggagaaaacgaataaaaagctaacacaattcaatccccccttcttgtgtttttctcaccttc 211556  T

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Target: scaffold0859 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2233 - 2167
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| ||||||  |||||||| |||||||||||||    
T  2233 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccacttcttgtgtttttctcaccttc 2167  T

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Target: scaffold0364 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 5422 - 5372
Alignment:
Q  16 gaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcacctt 65  Q
    ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||    
T  5422 gaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcacctt 5372  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 102819 - 102749
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaac-cccctttcttgtg-ttttctcaccttcggt 69  Q
    |||||||||||||| |||||||||  ||| |||||| ||| |||| |||||||| ||||||||||||||||    
T  102819 agcttaggagaaaacgaagaaaaagttaatacaattcaacacccccttcttgtgtttttctcaccttcggt 102749  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 83560 - 83495
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| ||||||||||| || || | |||||||| |||||||||||||    
T  83560 agcttaggagaaaaagaagaaaaagctaacacaattcaa-cctcattcttgtgtttttctcaccttc 83495  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 219503 - 219437
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgt-gttttctcaccttc 66  Q
    |||||||||||||| ||| |||||  |||||||||| ||||||||||||| |  |||||||||||||    
T  219503 agcttaggagaaaacgaaaaaaaaagtaacacaattcaaccccctttcttatatttttctcaccttc 219437  T

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Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 378401 - 378455
Alignment:
Q  4 ttaggagaaaatgaagaaaaatctaacacaatttaaccccct-ttcttgtgtttt 57  Q
    ||||||||||| ||||||||| ||||||||||| |||||| | ||||||||||||    
T  378401 ttaggagaaaacgaagaaaaagctaacacaattcaaccccttcttcttgtgtttt 378455  T

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Target: scaffold0567 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9162 - 9099
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||||||||||||| ||||||||| || |||||||| |||||||   |||||| |||||||||||||    
T  9162 agcttaggagaaaacgaagaaaaagcttacacaattcaaccccc---cttgtgtttttctcaccttc 9099  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18299 - 18232
Alignment:
Q  1 agcttaggagaaaatgaagaaaaatctaacacaatttaaccccctttcttgtg--ttttctcaccttc 66  Q
    |||||||||||||| |||||||||   ||||||||| |||||||  |||||||  |||||||||||||    
T  18299 agcttaggagaaaaagaagaaaaagaaaacacaattcaaccccccctcttgtgtcttttctcaccttc 18232  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 88456 - 88512
Alignment:
Q  11 aaaatgaagaaaaatctaacacaatttaaccccctttcttgtg-ttttctcaccttc 66  Q
    |||| |||||||||  |||||||||| ||||||| |||||||| |||||||||||||    
T  88456 aaaaagaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttc 88512  T

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