View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_65 (Length: 265)
Name: NF10129_low_65
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 28754473 - 28754711
Alignment:
| Q |
23 |
caataagaaattgcatttttctactatgaacatatgttacaaaacttatatgatacatagtttgagtatatagaaacaagaaaataaggagaaaaaataa |
122 |
Q |
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| T |
28754473 |
caataagaaattgcatttttctactatgaacatatgttacaaaacttatatgatacatagtttgagtatatagaaacaagaaaataaggagaaaaaataa |
28754572 |
T |
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| Q |
123 |
ccttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacatgatga |
222 |
Q |
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| T |
28754573 |
ccttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacatgatga |
28754672 |
T |
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| Q |
223 |
attgttttttcttcttatgataacactttcttctctctc |
261 |
Q |
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| T |
28754673 |
attgttttttcttcttatgataacactttcttctctctc |
28754711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 13751151 - 13751247
Alignment:
| Q |
121 |
aaccttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacat |
217 |
Q |
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| T |
13751151 |
aaccttgaaggttttgctccatccattttgattgctttgttctgacgtgactagcccaccaccatgaatatgcattgctagctgctctctgcaacat |
13751247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 27973578 - 27973499
Alignment:
| Q |
138 |
tccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacat |
217 |
Q |
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| T |
27973578 |
tccaaccattttgattgctttgtcctaatgtggctggcccaccaccatgaatatgcattacttgctgcccgttgcaacat |
27973499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 46044966 - 46045061
Alignment:
| Q |
122 |
accttggaggttttgttccatccattttgattgctttgttctaatgtggctggcccaccaccatgaataagcattgcttgcagctctttgcaacat |
217 |
Q |
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||||||||| ||||||||| |||||||||||| ||||| || |||||||| |||||||||||||||| |||||| |||| |||||| ||||||| |
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| T |
46044966 |
accttggagactttgttccagccattttgattgttttgtcctgatgtggctaacccaccaccatgaatatgcattggttgctgctcttcgcaacat |
46045061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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