View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_70 (Length: 255)
Name: NF10129_low_70
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 574581 - 574799
Alignment:
| Q |
18 |
cagagactaactagtaacttctatctctaaccacctaactcaaagctggttttaaatggctaattctaactctatatattcagcttctatcattcctaac |
117 |
Q |
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| T |
574581 |
cagaaactaactagtaacttctatctctaaccacctaactcaaagctggttttaaatggctaattctaactctattta----gcttctatcattcctaac |
574676 |
T |
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| Q |
118 |
ccctctttgtgagaaattaacacagccaaatacatagatgctaaactgaaagtatttcagcaccaagtcaaaatactatgaaagctaattctcatcaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
574677 |
ccctctttgtgagaaattaacacagccaaatacataaatgctaaactgaaagtatttcagcaccaagtcaaaatactatgagagctaatgctcatcaaag |
574776 |
T |
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| Q |
218 |
tacctatgtaatgatgtaaatgc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
574777 |
tacctatgtaatgatgtaaatgc |
574799 |
T |
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