View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_71 (Length: 254)
Name: NF10129_low_71
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 9452752 - 9452994
Alignment:
| Q |
4 |
aaatcaaggaaataaaactttgtcaagtgtcaggttaacaattccttgctctattataatagtacataaattagatttggttagataaataaaactttgt |
103 |
Q |
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| T |
9452752 |
aaatcagggaaataaaactttgtcaagtatcaggttaacaattccttgctctattatgatagtacataaattagatttggttagaaaaataaaactttgt |
9452851 |
T |
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| Q |
104 |
caaaa-aacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacaca |
202 |
Q |
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| T |
9452852 |
caaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttcacgaaagcttctagaatgagatggcaacaca |
9452951 |
T |
|
| Q |
203 |
ccatccattggatcttatatttaatgaattcaccgcttcatct |
245 |
Q |
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| T |
9452952 |
ccatccattagatcttatatttaatgaatttaccgcttcatct |
9452994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 21546721 - 21546588
Alignment:
| Q |
4 |
aaatcaaggaaataaaactttgtcaagtgtcaggttaacaattccttgctctattataatagtacataaattagatttggttagataaataaaactttgt |
103 |
Q |
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|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21546721 |
aaatcagggaaataaaact--gtcaagtaacaggttaacaattccttgctctattatgatagtacataaattagatttggttagataaataaaactttgt |
21546624 |
T |
|
| Q |
104 |
caaaaaacaatttgagatggcaaagatattttataa |
139 |
Q |
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| T |
21546623 |
caaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 46424083 - 46424181
Alignment:
| Q |
140 |
gaaaaatgctagataccgcgagaggatttttcacaaaagcttccagaatgagttgacaacacaccatccattggatcttatatttaatgaattcaccgct |
239 |
Q |
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|||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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