View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_79 (Length: 250)

Name: NF10129_low_79
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_79
NF10129_low_79
[»] chr8 (10 HSPs)
chr8 (1-245)||(15722350-15722594)
chr8 (5-239)||(15703522-15703757)
chr8 (5-239)||(15697133-15697378)
chr8 (5-180)||(15805186-15805358)
chr8 (35-82)||(15711834-15711881)
chr8 (139-239)||(15799785-15799885)
chr8 (5-62)||(15764205-15764262)
chr8 (5-62)||(15813027-15813084)
chr8 (145-239)||(15711952-15712046)
chr8 (5-62)||(15799641-15799698)
[»] chr3 (5 HSPs)
chr3 (205-242)||(3080481-3080518)
chr3 (205-242)||(3094918-3094955)
chr3 (205-242)||(4548013-4548050)
chr3 (5-77)||(3103468-3103540)
chr3 (37-77)||(3122999-3123039)
[»] chr5 (1 HSPs)
chr5 (203-239)||(470063-470099)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15722350 - 15722594
Alignment:
Q  1 ctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722350 ctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattat 15722449  T
Q  101 ggggaattttctaatatttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaa 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722450 ggggaattttctaatatttgattcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaa 15722549  T
Q  201 ttttcttgccaaaccaaaatcagatatttttggattcatctcact 245  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||    
T  15722550 ttttcttgccaaaccaaaatctgatatttttggattcatttcact 15722594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 15703522 - 15703757
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaa---tgttagttgtaagattatg 101  Q
    ||||||| ||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||  | |||    |||||||||  | || |||    
T  15703522 aaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaaatgcacagatcactgttagttgcga-ataatg 15703620  T
Q  102 gggaattttctaatatttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaat 201  Q
       |||||||||||||||| || | |||||| ||| |||||| |||| |||||| || | |||||||||||||| ||||| | || | ||  | ||||||    
T  15703621 taaaattttctaatatttgtttta-aaaagagttgtcaataacacttgctaggttcccataactctttttgtttctgtctgactttggcctttctcaaat 15703719  T
Q  202 tttcttgccaaaccaaaatcagatatttttggattcat 239  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  15703720 tttcttgccaatccaaaatctgatatttttggattcat 15703757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 15697133 - 15697378
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgtt-----------agttgta 93  Q
    ||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||| || |  ||           ||||||     
T  15697133 aaacatcggatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaagtcaaaagtacattgtcagactcagagttgtg 15697232  T
Q  94 agattatggggaattttctaatatttggttcagaaaagaattgccaat-aatacttactaggtaccaacaactctttttgtttttgtctcaattcgtccg 192  Q
    | |||||| | | |||||||||||||| || | || ||| |||||||| || ||||||||||| |||| |||||||||||||||||||| | || | ||     
T  15697233 a-attatgtgaacttttctaatatttgtttgaaaatagagttgccaataaacacttactaggtgccaataactctttttgtttttgtctgactttgacct 15697331  T
Q  193 ctttcaaattttcttgccaaaccaaaatcagatatttttggattcat 239  Q
     |||||||||| ||||| || |||||||| |||||||| ||||||||    
T  15697332 ttttcaaatttccttgctaatccaaaatctgatattttcggattcat 15697378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 15805186 - 15805358
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatagaatgttagttgtaagattatgggg 104  Q
    ||||||||||||| |||||||| |  ||| |||||||||||||||||||||||||||| |||| |||||| || | | ||| |||||| | || ||| |     
T  15805186 aaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactgtataaaattaaaatactgtcagttgtga-atcatgtga 15805284  T
Q  105 aattttctaatatttggttcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtc 180  Q
    || ||| ||||||||| ||  ||||| | || |||||||| |||||||||| |||| |||||||| ||||||||||    
T  15805285 aaatttataatatttgctt-tgaaaa-actttccaataatgcttactaggtgccaaaaactctttctgtttttgtc 15805358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 15711834 - 15711881
Alignment:
Q  35 ccatagcatattctggagccatgtatccgctgtttaaaatcaatagaa 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15711834 ccatagcatattctggagccatgtatccgctatttaaaatcaatagaa 15711881  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 15799785 - 15799885
Alignment:
Q  139 aataatacttactaggtaccaacaactctttttgtttttgtctca-attcgtccgctttcaaattttcttgccaaaccaaaatcagatatttttggattc 237  Q
    ||||| || |||||||| |||| |||||||||||||||||||| | ||| |||   | |||||| |||||||||| |||||||| |||||||||||||||    
T  15799785 aataacacatactaggtgccaaaaactctttttgtttttgtctgacattggtctt-tatcaaatgttcttgccaatccaaaatctgatatttttggattc 15799883  T
Q  238 at 239  Q
    ||    
T  15799884 at 15799885  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15764205 - 15764262
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatcc 62  Q
    ||||||||||||| || ||||| |  ||| ||||||||||||||||||||||||||||    
T  15764205 aaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatcc 15764262  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15813027 - 15813084
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatcc 62  Q
    ||||||||||||| |||||||| |  ||| ||||||| ||||||||||||||||||||    
T  15813027 aaacatcggatttcactgaaaataacccagccatagcgtattctggagccatgtatcc 15813084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 15711952 - 15712046
Alignment:
Q  145 acttactaggtaccaacaactctttttgtttttgtctcaattcgtccgctttcaaattttcttgccaaaccaaaatcagatatttttggattcat 239  Q
    ||||||||||| || |  ||||||||||||| ||||| | || | ||  |||||||  |||||||||| ||||| || |||||||||||||||||    
T  15711952 acttactaggttcccatgactctttttgtttctgtctgactttggcctttttcaaaccttcttgccaatccaaagtctgatatttttggattcat 15712046  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15799641 - 15799698
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatcc 62  Q
    ||||||||||||| |||||||| |  ||| ||||||| ||||| ||||||||||||||    
T  15799641 aaacatcggatttcactgaaaataacccagccatagcgtattcaggagccatgtatcc 15799698  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 3080518 - 3080481
Alignment:
Q  205 cttgccaaaccaaaatcagatatttttggattcatctc 242  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3080518 cttgccaatccaaaatcagatatttttggattcatctc 3080481  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 3094955 - 3094918
Alignment:
Q  205 cttgccaaaccaaaatcagatatttttggattcatctc 242  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3094955 cttgccaatccaaaatcagatatttttggattcatctc 3094918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 4548013 - 4548050
Alignment:
Q  205 cttgccaaaccaaaatcagatatttttggattcatctc 242  Q
    |||||||| |||||||||||||||||||||||||||||    
T  4548013 cttgccaatccaaaatcagatatttttggattcatctc 4548050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 3103540 - 3103468
Alignment:
Q  5 aaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaa 77  Q
    ||||||| || || |||||||||| |||  |||||||||||||||||||||| ||||| ||| | ||||||||    
T  3103540 aaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccactgctcaaaatcaa 3103468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 3123039 - 3122999
Alignment:
Q  37 atagcatattctggagccatgtatccgctgtttaaaatcaa 77  Q
    |||||||||||||||||||||||||| ||| | ||||||||    
T  3123039 atagcatattctggagccatgtatccactgctcaaaatcaa 3122999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 470063 - 470099
Alignment:
Q  203 ttcttgccaaaccaaaatcagatatttttggattcat 239  Q
    ||||||||||||||||||| |||||||||||||||||    
T  470063 ttcttgccaaaccaaaatctgatatttttggattcat 470099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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