View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_80 (Length: 250)

Name: NF10129_low_80
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_80
NF10129_low_80
[»] chr6 (14 HSPs)
chr6 (1-242)||(29827857-29828098)
chr6 (69-231)||(28295843-28296005)
chr6 (69-231)||(28516068-28516230)
chr6 (69-242)||(28244783-28244956)
chr6 (40-242)||(28187303-28187504)
chr6 (121-242)||(28236411-28236532)
chr6 (119-242)||(28141474-28141597)
chr6 (135-242)||(28151112-28151219)
chr6 (200-242)||(26341726-26341768)
chr6 (170-233)||(27602892-27602955)
chr6 (203-242)||(28096674-28096713)
chr6 (100-170)||(2172517-2172587)
chr6 (182-242)||(28327433-28327493)
chr6 (182-242)||(28505069-28505129)
[»] scaffold0038 (2 HSPs)
scaffold0038 (69-242)||(44945-45118)
scaffold0038 (121-242)||(36573-36694)
[»] scaffold0019 (1 HSPs)
scaffold0019 (40-242)||(56377-56579)
[»] chr2 (1 HSPs)
chr2 (200-242)||(3281587-3281629)
[»] chr5 (2 HSPs)
chr5 (120-240)||(16693009-16693129)
chr5 (151-235)||(17819355-17819439)
[»] scaffold0286 (1 HSPs)
scaffold0286 (100-170)||(21456-21526)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29828098 - 29827857
Alignment:
Q  1 aaatggaattactatctctaccttttttaatgagctagacaactcaaatgatgtaaagccatttccaggtagcttgcatatagaaagtttctttggacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29828098 aaatggaattactatctctaccttttttaatgagctagacaactcaaatgatgtaaagccatttccaggtagcttgcatatagaaagtttctttggacaa 29827999  T
Q  101 aaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29827998 aaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttcta 29827899  T
Q  201 caataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  29827898 taataagtgttttgaggtttttcatcttcttcaattcatctc 29827857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 231
Target Start/End: Original strand, 28295843 - 28296005
Alignment:
Q  69 gtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttg 168  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |    | |||||||||||  |||||||||||| ||||| |||||||| ||||| |     
T  28295843 gtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagata 28295942  T
Q  169 ttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttctt 231  Q
    || |||| || | ||||||| |||||| |  |||||||||||||||||||||| |||||||||    
T  28295943 tttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttctt 28296005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 28516230 - 28516068
Alignment:
Q  69 gtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttg 168  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |    | |||||||||||  |||||||||||| ||||| |||||||| ||||| |     
T  28516230 gtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagata 28516131  T
Q  169 ttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttctt 231  Q
    || |||| || | ||||||| |||||| |  |||||||||||||||||||||| |||||||||    
T  28516130 tttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttctt 28516068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 28244956 - 28244783
Alignment:
Q  69 gtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttg 168  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |    | |||||||||||  |||||||||||| ||||| | |||||||||||| |     
T  28244956 gtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgaccggtgaaggatatttaggccattccaatactctcagactgtttggaagata 28244857  T
Q  169 ttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    ||  ||| |  | ||||||  |||||| |  |||||||||||||||||||||| ||||||||||| ||||||||    
T  28244856 ttttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcatctc 28244783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 28187504 - 28187303
Alignment:
Q  40 caactcaaatgatgtaaagccatttccaggtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccat 139  Q
    ||||||||||||||||||| || ||    |||| |||||||||||||||||||||||  ||||||||  ||| |    | |||||||||||    |||||    
T  28187504 caactcaaatgatgtaaagtcactttgctgtagtttgcatatagaaagtttctttgg-gaaaaatcagatggtatgacccgtgaaggatatttttgccat 28187406  T
Q  140 tccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcat 239  Q
    ||||| ||||| |||||||||||||| | ||  ||| |  | ||||||  |||||| |  ||||||||||||||||| |||| |||||||| || |||||    
T  28187405 tccaatactctcaaactgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgagcttttgcatcttctccagttcat 28187306  T
Q  240 ctc 242  Q
    |||    
T  28187305 ctc 28187303  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 28236532 - 28236411
Alignment:
Q  121 tgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggttt 220  Q
    ||||||||||  |||||||||||| ||||| ||||| || ||||| |  | |||| || | ||||||  |||||| |  |||||||||||||||||||||    
T  28236532 tgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaacaataagtgttttgaggttt 28236433  T
Q  221 ttcatcttcttcaattcatctc 242  Q
    | ||||||||| | ||||||||    
T  28236432 tgcatcttcttgagttcatctc 28236411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 28141597 - 28141474
Alignment:
Q  119 tgtgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggt 218  Q
    ||||||||||| | | |||||||||  ||||||||| | |||||||| || ||| || || | |||||||||||  |||  | |||||  ||||||||||    
T  28141597 tgtgaaggataactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggt 28141498  T
Q  219 ttttcatcttcttcaattcatctc 242  Q
    ||| ||||||||| ||||||||||    
T  28141497 tttccatcttctttaattcatctc 28141474  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 28151219 - 28151112
Alignment:
Q  135 gccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaa 234  Q
    |||||||||| ||||||||||| |||||||| ||| || |||   |  |||||  || | |||  |||| ||||||||||||||||||||||||||| ||    
T  28151219 gccattccaatactcttaaactatttggaagatgtacatgagggttgaaaaagaaactagttttaacaacaagtgttttgaggtttttcatcttcttgaa 28151120  T
Q  235 ttcatctc 242  Q
    ||||||||    
T  28151119 ttcatctc 28151112  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 26341726 - 26341768
Alignment:
Q  200 acaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  26341726 acaacaagtgttttgaggtttttcatcttcttgaattcatctc 26341768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 27602892 - 27602955
Alignment:
Q  170 tcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttca 233  Q
    |||||| ||||||||||  |||||||||| |  |||||||||||||| ||| ||||||||||||    
T  27602892 tcaggacctctagaaaactgaccattttcaatgataagtgttttgagatttgtcatcttcttca 27602955  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 28096674 - 28096713
Alignment:
Q  203 ataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  28096674 ataagtgttttaaggtttttcatcttctttaattcatctc 28096713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 2172517 - 2172587
Alignment:
Q  100 aaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttgtt 170  Q
    |||||||| ||| |||| |||||||||||||| |||||| ||||  ||||||||||  |||||||| ||||    
T  2172517 aaaatcatatggtaaattctgtgaaggatatctaggccaatccagcactcttaaaccatttggaagatgtt 2172587  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 28327493 - 28327433
Alignment:
Q  182 gaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    ||||||| |||||| |  |||||||||||||| ||||||| ||||||||| | ||||||||    
T  28327493 gaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatctc 28327433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 28505129 - 28505069
Alignment:
Q  182 gaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    ||||||| |||||| |  |||||||||||||| ||||||| ||||||||| | ||||||||    
T  28505129 gaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatctc 28505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 45118 - 44945
Alignment:
Q  69 gtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttg 168  Q
    |||||||||||||||||||||||||||| |||||||||  ||| |    | |||||||||||  |||||||||||| ||||| | |||||||||||| |     
T  45118 gtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgaccggtgaaggatatttaggccattccaatactctcagactgtttggaagata 45019  T
Q  169 ttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    ||  ||| |  | ||||||  |||||| |  |||||||||||||||||||||| ||||||||||| ||||||||    
T  45018 ttttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcatctc 44945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 36694 - 36573
Alignment:
Q  121 tgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggttt 220  Q
    ||||||||||  |||||||||||| ||||| ||||| || ||||| |  | |||| || | ||||||  |||||| |  |||||||||||||||||||||    
T  36694 tgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaaggtaccattcttaacaataagtgttttgaggttt 36595  T
Q  221 ttcatcttcttcaattcatctc 242  Q
    | ||||||||| | ||||||||    
T  36594 tgcatcttcttgagttcatctc 36573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 56377 - 56579
Alignment:
Q  40 caactcaaatgatgtaaagccatttccaggtagcttgcatatagaaagtttctttggacaaaaatcatgtggcaaatactgtgaaggatatccaggccat 139  Q
    |||||| |||||||||||| || ||    |||| |||||||||||||||||||| ||  ||| ||||  ||| |   || |||||||||||  | |||||    
T  56377 caactcgaatgatgtaaagtcactttgctgtagtttgcatatagaaagtttcttcgggaaaatatcagatggtacgaaccgtgaaggatatttacgccat 56476  T
Q  140 tccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaattcat 239  Q
    ||||| ||||| |||||||| ||||| |||| |||| || | ||||||| |||||| |  |||||||||||||||||||||| ||||||||| | |||||    
T  56477 tccaatactctcaaactgttaggaagatgtttaggacctttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcat 56576  T
Q  240 ctc 242  Q
    |||    
T  56577 ctc 56579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 3281629 - 3281587
Alignment:
Q  200 acaataagtgttttgaggtttttcatcttcttcaattcatctc 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  3281629 acaataagtgttttgaggtttttcatcttcttgaattcatctc 3281587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 16693129 - 16693009
Alignment:
Q  120 gtgaaggatatccaggccattccaagactcttaaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtt 219  Q
    |||||||||||| | ||||||| |  ||||||||||| |||||||| ||||  ||  || | |||||| ||||||| |  | ||||||||||||||||||    
T  16693129 gtgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaagtgaccattcttaataataagtgttttgaggtt 16693030  T
Q  220 tttcatcttcttcaattcatc 240  Q
    | |||||||||| || |||||    
T  16693029 tatcatcttcttgaactcatc 16693009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 17819439 - 17819355
Alignment:
Q  151 taaactgtttggaagttgttcaggagctctagaaaagcgaccattttctacaataagtgttttgaggtttttcatcttcttcaat 235  Q
    |||||| |||||||| || | |||  |||| ||||||||| | |||||||| || ||| |||||||||||| |||||||||||||    
T  17819439 taaactttttggaagatgataaggtcctctggaaaagcgagctttttctactattagtattttgaggttttccatcttcttcaat 17819355  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 21526 - 21456
Alignment:
Q  100 aaaatcatgtggcaaatactgtgaaggatatccaggccattccaagactcttaaactgtttggaagttgtt 170  Q
    |||||||| ||| |||| |||||||||||||| |||||| ||||  ||||||||||  |||||||| ||||    
T  21526 aaaatcatatggtaaattctgtgaaggatatctaggccaatccagcactcttaaaccatttggaagatgtt 21456  T

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