View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_84 (Length: 250)
Name: NF10129_low_84
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 38062438 - 38062194
Alignment:
| Q |
1 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38062438 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccactcaaaatctcagatttgcatc |
38062339 |
T |
|
| Q |
101 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
38062338 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaagacatgacctgcagattcga |
38062239 |
T |
|
| Q |
201 |
atccgaagcggcggccacgacttcgagggtcggtcctatgcttct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38062238 |
atccgaagcggcggccacgacttcgagggtcggtcctatgtttct |
38062194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38058016 - 38058260
Alignment:
| Q |
1 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcatc |
100 |
Q |
| |
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||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
38058016 |
cacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatc |
38058115 |
T |
|
| Q |
101 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttgc |
200 |
Q |
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| T |
38058116 |
caacacaacacctaaacctcttttcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcga |
38058215 |
T |
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| Q |
201 |
atccgaagcggcggccacgacttcgagggtcggtcctatgcttct |
245 |
Q |
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| T |
38058216 |
atccgaagcggtggccatgattttgagggtcggtcctatgtttct |
38058260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38072344 - 38072574
Alignment:
| Q |
1 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcatc |
100 |
Q |
| |
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|||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||| | |
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| T |
38072344 |
cacataacataacttcaatctctaaagttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaac |
38072443 |
T |
|
| Q |
101 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttgc |
200 |
Q |
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||| |||||| ||||| ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||| ||| | |
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| T |
38072444 |
caatgaaacaccaaaaccccttgtcattatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaattcga |
38072543 |
T |
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| Q |
201 |
atccgaagcggcggccacgacttcgagggtc |
231 |
Q |
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|| || || || ||||||||||||||||||| |
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| T |
38072544 |
attcgtagtggtggccacgacttcgagggtc |
38072574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38085854 - 38086093
Alignment:
| Q |
1 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcatc |
100 |
Q |
| |
|
|||||||||| |||||||| |||||| |||||||||||||| ||||||| || ||| ||||||||||||||||| | |||||||||||||||||||| | |
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| T |
38085854 |
cacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagatttgcaac |
38085953 |
T |
|
| Q |
101 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatttgc |
200 |
Q |
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||| | |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||| ||||||||| |||| ||||||||||| | |
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| T |
38085954 |
caacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcagattcga |
38086053 |
T |
|
| Q |
201 |
atccgaagcggcggccacgacttcgagggtcggtcctatg |
240 |
Q |
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|| || |||||||| |||||||| ||||||| ||| |||| |
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| T |
38086054 |
attcgcagcggcggtcacgactttgagggtctgtcttatg |
38086093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 38081429 - 38081625
Alignment:
| Q |
1 |
cacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccgctcaaaatctcagatttgcatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||| ||||||||||| |
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| T |
38081429 |
cacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaactcaaaatctaagatttgcatc |
38081528 |
T |
|
| Q |
101 |
caaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaaaccatggcctgcagatt |
197 |
Q |
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| | | |||||| ||||| |||||||| ||||||||| | | |||||| ||||||||| ||||||| ||||||||||| |||||||| |||||| |
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| T |
38081529 |
ctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaaatcatggcctccagatt |
38081625 |
T |
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