View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_87 (Length: 249)
Name: NF10129_low_87
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 33378240 - 33378481
Alignment:
| Q |
1 |
caaaagatagaagctacattaagggaagcattgaaagcacgcgcccaaaatccgatcctctttacttcaacagtttagaggtatctgcggtagcgtatta |
100 |
Q |
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| T |
33378240 |
caaaagatagaagctacattaagggaagcattgaaagcacgcgcccaaaatccgatcctctttacttcaacagtttagaggtatctgcggtagcgtatta |
33378339 |
T |
|
| Q |
101 |
cattcaagaagcgagaagaaatgtttggagaatggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactc |
200 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378340 |
cattcaagaagtgagaagaaatgtttggagaacggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactc |
33378439 |
T |
|
| Q |
201 |
aaccatgtgaagagaaaccctaatgtgcttcccttcatctca |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378440 |
aaccatgtgaagagaaaccctaatgtgcttcccttcatctca |
33378481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 33384502 - 33384622
Alignment:
| Q |
122 |
tgtttggagaatggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccct |
221 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | || || |
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| T |
33384502 |
tgtttggagaatggatatggagattatcatggttctgatatctacaactctagcatgtgttttcgtcggattgcaactataccatgtcaagaaacacact |
33384601 |
T |
|
| Q |
222 |
aatgtgcttcccttcatctca |
242 |
Q |
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| T |
33384602 |
aatgtgcttcccttcatctca |
33384622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 26790811 - 26790691
Alignment:
| Q |
122 |
tgtttggagaatggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccct |
221 |
Q |
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||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | ||||| |
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| T |
26790811 |
tgtttggagaacggatatggagattatcatggttctgatatctacaactctagcatgtgttttcgtcggcctgcaactataccatgtcaagaaacaccct |
26790712 |
T |
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| Q |
222 |
aatgtgcttcccttcatctca |
242 |
Q |
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||||||||||||||||||||| |
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| T |
26790711 |
aatgtgcttcccttcatctca |
26790691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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