View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_9 (Length: 481)

Name: NF10129_low_9
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_9
NF10129_low_9
[»] chr8 (4 HSPs)
chr8 (18-190)||(39625635-39625805)
chr8 (18-190)||(39635185-39635355)
chr8 (158-265)||(39628064-39628171)
chr8 (158-265)||(39637614-39637721)
[»] chr7 (7 HSPs)
chr7 (367-471)||(11668211-11668317)
chr7 (270-337)||(11668803-11668873)
chr7 (275-337)||(11668446-11668511)
chr7 (282-337)||(8648888-8648946)
chr7 (377-450)||(39616949-39617024)
chr7 (271-326)||(15090393-15090451)
chr7 (364-450)||(8648661-8648749)
[»] chr5 (6 HSPs)
chr5 (270-337)||(10731440-10731510)
chr5 (395-471)||(10731607-10731684)
chr5 (395-471)||(16364341-16364419)
chr5 (395-430)||(29384964-29384999)
chr5 (368-471)||(11991044-11991149)
chr5 (295-337)||(16364750-16364792)
[»] chr3 (5 HSPs)
chr3 (275-333)||(18194492-18194553)
chr3 (270-333)||(47257216-47257282)
chr3 (377-461)||(40243867-40243953)
chr3 (401-471)||(27080172-27080244)
chr3 (270-339)||(2063580-2063652)
[»] chr4 (5 HSPs)
chr4 (395-470)||(54851898-54851975)
chr4 (395-471)||(54854478-54854556)
chr4 (395-462)||(54852332-54852401)
chr4 (396-470)||(54853895-54853971)
chr4 (401-471)||(54854904-54854976)
[»] chr2 (2 HSPs)
chr2 (402-467)||(34323585-34323652)
chr2 (395-467)||(16642056-16642129)
[»] chr6 (1 HSPs)
chr6 (392-430)||(30122934-30122972)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39625635 - 39625805
Alignment:
Q  18 cgatcttagtttaaatttccttaaatagtt-gttaggtgattactggttagttatgataacactagaacttctttttccctatatttttgtaatccgttt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39625635 cgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatttttgtaatccgttt 39625734  T
Q  117 agtttgatgcatataagagataaaattccgccaaattcggtattttgtaactgaatacgtctttttggtggaat 190  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39625735 agtttgatg---ataagagataaaattccgccaaattcggtattttgtaactgaatacgtctttttggtggaat 39625805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39635185 - 39635355
Alignment:
Q  18 cgatcttagtttaaatttccttaaatagtt-gttaggtgattactggttagttatgataacactagaacttctttttccctatatttttgtaatccgttt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39635185 cgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatttttgtaatccgttt 39635284  T
Q  117 agtttgatgcatataagagataaaattccgccaaattcggtattttgtaactgaatacgtctttttggtggaat 190  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39635285 agtttgatg---ataagagataaaattccgccaaattcggtattttgtaactgaatacgtctttttggtggaat 39635355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 39628064 - 39628171
Alignment:
Q  158 attttgtaactgaatacgtct-ttttggtggaataatagtaacagattagtgaaatagaat-aactattattttctcccatctatttatttctcggacgt 255  Q
    ||||||||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||| ||||| |||  |||    
T  39628064 attttgtaactgaatatttctctttttgtggaataatcgtaacagattagtgaaatagaataaactattattt--tcccatctatctatttttcgcgcgt 39628161  T
Q  256 tctatttttt 265  Q
    ||||||||||    
T  39628162 tctatttttt 39628171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 39637614 - 39637721
Alignment:
Q  158 attttgtaactgaatacgtct-ttttggtggaataatagtaacagattagtgaaatagaat-aactattattttctcccatctatttatttctcggacgt 255  Q
    ||||||||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||| ||||| |||  |||    
T  39637614 attttgtaactgaatatttctctttttgtggaataatcgtaacagattagtgaaatagaataaactattattt--tcccatctatctatttttcgcgcgt 39637711  T
Q  256 tctatttttt 265  Q
    ||||||||||    
T  39637712 tctatttttt 39637721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 471
Target Start/End: Original strand, 11668211 - 11668317
Alignment:
Q  367 atctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttcttaatttt--gacaagttatcaaaattataatcttttgtgtcct 464  Q
    |||||| || ||||||||||  || || ||||| ||||||||||||||||||||||||||||||  |||| || ||||||||||||  |||||||||| |    
T  11668211 atctattatctaattatgaaacttaatgtctaccaaaaatacaatcttaccccttcttaatttttagacacgtcatcaaaattatatccttttgtgtcat 11668310  T
Q  465 ttgcttc 471  Q
    |||||||    
T  11668311 ttgcttc 11668317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 11668803 - 11668873
Alignment:
Q  270 taattttaatctcaatcaaaacaaatt---ttataattcaacttctaaatatctaaagagttcaaaacaat 337  Q
    |||||||||||||||||||||||||||   |||||||||| ||||||||||| ||||||||| ||||||||    
T  11668803 taattttaatctcaatcaaaacaaattttcttataattcatcttctaaatatttaaagagttaaaaacaat 11668873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 11668446 - 11668511
Alignment:
Q  275 ttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 337  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||||||||||||| ||||||||    
T  11668446 ttaatctcaatcaaaacaaattttcctataattcaacttttaaatatctaaagagttaaaaacaat 11668511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 337
Target Start/End: Original strand, 8648888 - 8648946
Alignment:
Q  282 caatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 337  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||| ||||||||    
T  8648888 caatcaaaacaaattttcctataattcaacttctaattatctaaagagtttaaaacaat 8648946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 39616949 - 39617024
Alignment:
Q  377 taattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattata 450  Q
    |||||||||| ||| || ||||| ||||||||| ||||||||||||||||  |||||||| || ||||||||||||    
T  39616949 taattatgaaatttaatgtctaccaaaaatacagtcttaccccttcttaattttttgacatgtcatcaaaattata 39617024  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 15090451 - 15090393
Alignment:
Q  271 aattttaatctcaatcaaaacaaattt---tataattcaacttctaaatatctaaagag 326  Q
    |||||||||| ||||||||||||||||   |||| || |||||||||||||||||||||    
T  15090451 aattttaatcccaatcaaaacaaatttttctatattttaacttctaaatatctaaagag 15090393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 8648661 - 8648749
Alignment:
Q  364 tctatctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattata 450  Q
    |||||||||  ||||||||||||  || |||| |||  |||||||||||||| ||||||| |  ||||||||| || ||||||||||||    
T  8648661 tctatctattctataattatgaaacttaatatttaccgaaaatacaatcttatcccttctaaatattttgacacgtcatcaaaattata 8648749  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 10731510 - 10731440
Alignment:
Q  270 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 337  Q
    |||| |||||| |||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||    
T  10731510 taatcttaatcccaatcaaaacaaattttcctataattcaacttctaaatatctaaagagttaaaaacaat 10731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 10731684 - 10731607
Alignment:
Q  395 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttgcttc 471  Q
    |||| |||||||||||||||||| ||||||||  |||||||| || ||||||||||| |||||||||||| ||||||||    
T  10731684 tctattaaaaatacaatcttacctcttcttaattttttgacacgtcatcaaaattat-atcttttgtgtcttttgcttc 10731607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 16364341 - 16364419
Alignment:
Q  395 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttgcttc 471  Q
    ||||| ||||||||||||||||||||||||||  |||||||| || ||||||||||||  || ||||||| ||| ||||    
T  16364341 tctaccaaaaatacaatcttaccccttcttaattttttgacacgtcatcaaaattatatcctgttgtgtcttttacttc 16364419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 430
Target Start/End: Original strand, 29384964 - 29384999
Alignment:
Q  395 tctactaaaaatacaatcttaccccttcttaatttt 430  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29384964 tctaccaaaaatacaatcttaccccttcttaatttt 29384999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 471
Target Start/End: Original strand, 11991044 - 11991149
Alignment:
Q  368 tctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctt 465  Q
    |||||||| ||||||| ||  || || ||||| ||||||| ||||||||||||||| ||  ||||||||  |||| |||| ||||  |||||||||| ||    
T  11991044 tctatcatctaattataaaacttaatgtctacgaaaaatataatcttaccccttctgaattttttgacatattataaaaaatatatccttttgtgtcttt 11991143  T
Q  466 tgcttc 471  Q
    ||||||    
T  11991144 tgcttc 11991149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 16364750 - 16364792
Alignment:
Q  295 ttttataattcaacttctaaatatctaaagagttcaaaacaat 337  Q
    |||||||||||||||||||||||  ||||||||| ||||||||    
T  16364750 ttttataattcaacttctaaatagttaaagagttaaaaacaat 16364792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 18194553 - 18194492
Alignment:
Q  275 ttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaa 333  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  18194553 ttaatctcaatcaaaacaaattttcatataattcaacttctaaatatctaaagagttaaaaa 18194492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 47257282 - 47257216
Alignment:
Q  270 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaa 333  Q
    |||| ||||||||||| || |||||||||   |||||||||||||||||||||||||||||| ||||    
T  47257282 taatcttaatctcaatgaatacaaatttttcgataattcaacttctaaatatctaaagagttaaaaa 47257216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 40243867 - 40243953
Alignment:
Q  377 taattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgt 461  Q
    ||||||||||  || || ||||| ||||||| ||||||||||||| ||||  |||||||| || |||||||||||| ||||||||||    
T  40243867 taattatgaaacttaatttctaccaaaaataaaatcttaccccttattaattttttgacacgtcatcaaaattatattcttttgtgt 40243953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 471
Target Start/End: Original strand, 27080172 - 27080244
Alignment:
Q  401 aaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttgcttc 471  Q
    ||||||||||| ||||||||||||||  |||||||| || |||||||||||   |||||||||| ||||||||    
T  27080172 aaaaatacaatattaccccttcttaatcttttgacacgtcatcaaaattatttccttttgtgtcttttgcttc 27080244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 2063580 - 2063652
Alignment:
Q  270 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaatct 339  Q
    |||||||||||  ||||||||||||||||   ||||||  |||||||||||| |||||| || ||||||||||    
T  2063580 taattttaatcctaatcaaaacaaatttttctataatttcacttctaaatatgtaaagatttaaaaacaatct 2063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 470
Target Start/End: Complemental strand, 54851975 - 54851898
Alignment:
Q  395 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtcctttgctt 470  Q
    ||||| |||||||||||||||||||||||||  ||||||||| || ||||||||||||  |||||||||| |||||||    
T  54851975 tctaccaaaaatacaatcttaccccttcttaatattttgacacgtcatcaaaattatatccttttgtgtcttttgctt 54851898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 471
Target Start/End: Complemental strand, 54854556 - 54854478
Alignment:
Q  395 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtcctttgcttc 471  Q
    ||||| |||||||||||||||||||||||||  ||||||||  |||||||||||||||  ||||||| || ||||||||    
T  54854556 tctaccaaaaatacaatcttaccccttcttagtattttgacgcgttatcaaaattatatccttttgtatcttttgcttc 54854478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 54852401 - 54852332
Alignment:
Q  395 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtc 462  Q
    ||||| ||||||||||||||| |||||||||  ||||||||| || || |||||||||  ||||||||||    
T  54852401 tctaccaaaaatacaatcttaacccttcttaatattttgacacgtcattaaaattatatccttttgtgtc 54852332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 54853971 - 54853895
Alignment:
Q  396 ctactaaaaatacaatcttaccccttcttaat--tttgacaagttatcaaaattataatcttttgtgtcctttgctt 470  Q
    |||| ||||||||||||||| ||||| |||||  ||||||| || ||||||||||||   ||||||||| |||||||    
T  54853971 ctacaaaaaatacaatcttatccctttttaatattttgacacgtcatcaaaattatatcattttgtgtcttttgctt 54853895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 471
Target Start/End: Complemental strand, 54854976 - 54854904
Alignment:
Q  401 aaaaatacaatcttaccccttcttaat--tttgacaagttatcaaaattataatcttttgtgtcctttgcttc 471  Q
    |||||||||||||||| ||||||||||  ||||||| || |||||||||| |   ||||||||| ||||||||    
T  54854976 aaaaatacaatcttactccttcttaatagtttgacacgtcatcaaaattacatcattttgtgtcttttgcttc 54854904  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 467
Target Start/End: Complemental strand, 34323652 - 34323585
Alignment:
Q  402 aaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttg 467  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||   ||||||||| ||||    
T  34323652 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatctttttgtgtcttttg 34323585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 467
Target Start/End: Complemental strand, 16642129 - 16642056
Alignment:
Q  395 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttg 467  Q
    ||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||  |||||| ||| ||||    
T  16642129 tctaccaaaaatacaatcttaccccttcttaattttttgacaa-ttatcaaaattatatccttttgcgtcttttg 16642056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 30122934 - 30122972
Alignment:
Q  392 atatctactaaaaatacaatcttaccccttcttaatttt 430  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  30122934 atatctaccaaaaatataatcttaccccttcttaatttt 30122972  T

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