View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10129_low_90 (Length: 243)
Name: NF10129_low_90
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42142108 - 42142331
Alignment:
| Q |
1 |
tcatgttcttgacatgttcttataacaaatcacaatggttgaattaaaaggatatgtgagaataacattcatgcctttcaatctttcatggattaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42142108 |
tcatgttcttgacatgttcttataacaaatcacaatggttgaattaaaaggatatgtgagaataacattcatgcctttcaatctttcatggattaagaac |
42142207 |
T |
|
| Q |
101 |
ttgccatgaaaagtatgtggctaaccaaccaagtttctacctccattatataggaaagttttggtgtgatgctgttgactcataacatctaaactttctt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42142208 |
ttgccatgaaaagtatgtggccaaccaaccaagtttctacctccattatataggaaagttttggtgtgatgctgttgactcataacatctaaactttctt |
42142307 |
T |
|
| Q |
201 |
attagatacttagtttcaatacct |
224 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
42142308 |
attagatacttagtttcaacacct |
42142331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University