View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10129_low_93 (Length: 242)

Name: NF10129_low_93
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10129_low_93
NF10129_low_93
[»] chr7 (6 HSPs)
chr7 (14-242)||(22862800-22863028)
chr7 (10-242)||(47556226-47556458)
chr7 (14-242)||(20695069-20695297)
chr7 (14-242)||(20700547-20700775)
chr7 (79-242)||(591117-591280)
chr7 (61-239)||(12124573-12124751)
[»] chr8 (1 HSPs)
chr8 (10-242)||(10798734-10798966)
[»] chr6 (2 HSPs)
chr6 (10-242)||(5388578-5388810)
chr6 (185-242)||(2897316-2897373)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-242)||(221770-221998)
[»] scaffold0032 (1 HSPs)
scaffold0032 (14-150)||(50126-50262)
[»] chr4 (2 HSPs)
chr4 (14-150)||(17823927-17824063)
chr4 (109-150)||(15646312-15646353)
[»] chr3 (3 HSPs)
chr3 (61-242)||(17150864-17151045)
chr3 (79-239)||(3517690-3517850)
chr3 (59-149)||(23824553-23824643)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 22863028 - 22862800
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22863028 cattaaaatcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaga 22862929  T
Q  114 agcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaa 213  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||     
T  22862928 agcataaatattcgccaaacagaacacctcattatttgttacaaaggagcctttaacaatcaaacaattatcaatatttactgacaaccagacatccaac 22862829  T
Q  214 acagacggatcccacaccgtaataatacc 242  Q
    ||||| |||||||||||||||||||||||    
T  22862828 acagaaggatcccacaccgtaataatacc 22862800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 47556226 - 47556458
Alignment:
Q  10 acatcattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcac 109  Q
    ||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47556226 acatcattaaagtcaccaagaacacaccacaccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcac 47556325  T
Q  110 aaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatc 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||    
T  47556326 aaggagcataaatattcgccaaacagaacacctcattatttgctacaaaggagcctttaacaatcaaacaattagcaatatttactgacaaccagacatc 47556425  T
Q  210 caaaacagacggatcccacaccgtaataatacc 242  Q
    ||| ||||| |||||||||| ||| ||||||||    
T  47556426 caacacagaaggatcccacaacgtgataatacc 47556458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 20695297 - 20695069
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    |||||||||||||||||| ||||||||| |||||  ||||||   ||| ||||||||| ||   |||||||||  | || ||||||||| | ||||||||    
T  20695297 cattaaaatcaccaagaatacaccaagcagcttcatcatgtacctgaatcaaattagataacacatcccacaaatcttgccgccccctattgtcacaagg 20695198  T
Q  114 agcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaa 213  Q
     |||||  |||| |||||||| ||||  ||| |||||  ||  ||    ||||||||||||||||||| | ||||||| || | || ||||||||||||     
T  20695197 ggcataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaacatccaac 20695098  T
Q  214 acagacggatcccacaccgtaataatacc 242  Q
    |||   |  |||||||| |||||||||||    
T  20695097 acactagagtcccacactgtaataatacc 20695069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 20700775 - 20700547
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    |||||||||||||||||| ||||||||| |||||  ||||||   ||| ||||||||| ||   |||||||||  | || ||||||||| | ||||||||    
T  20700775 cattaaaatcaccaagaatacaccaagcagcttcatcatgtacctgaatcaaattagataacacatcccacaaatcttgccgccccctattgtcacaagg 20700676  T
Q  114 agcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaa 213  Q
     |||||  |||| |||||||| ||||  ||| |||||  ||  ||    ||||||||||||||||||| | ||||||| || | || ||||||||||||     
T  20700675 ggcataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaacatccaac 20700576  T
Q  214 acagacggatcccacaccgtaataatacc 242  Q
    |||   |  |||||||| |||||||||||    
T  20700575 acactagagtcccacactgtaataatacc 20700547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 591117 - 591280
Alignment:
Q  79 tcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaac 178  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| || |||||||| ||||  ||||| |||  || ||| || || || |  ||||| |    
T  591117 tcccacaacatctgtcgccccctaatattagaaggagcataaatgtttgccaaacaaaacatgtcattgttttttaaaaacgacccctttatcatcaagc 591216  T
Q  179 aataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacc 242  Q
    |||   |||||||||| | || |||||||||||  |||   |||||||||||||||||||||||    
T  591217 aatttgcaatatttacagtcatccaaacatccagcacactaggatcccacaccgtaataatacc 591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 12124573 - 12124751
Alignment:
Q  61 aacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaagg 160  Q
    ||||||||||| | ||  |||||||| | ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||  |||||||||   | ||| |    
T  12124573 aacaaattagagatagcttcccacaaaagctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcattatttttaataaacg 12124672  T
Q  161 aacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataat 239  Q
    | || || |  ||||||||||    ||| ||||| | || |||||||||||| |||   ||||||||||||||||||||    
T  12124673 accccttgatcatcaaacaatttgtaatgtttaccgtcatccaaacatccaacacactaggatcccacaccgtaataat 12124751  T

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Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 10798966 - 10798734
Alignment:
Q  10 acatcattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcac 109  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10798966 acatcattaaagtcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacttgtcgccccctactatcac 10798867  T
Q  110 aaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatc 209  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  10798866 aaggagcataaatattcgccaaactgaacacctcattatttgctacaaaggagcctttaacaatcaaacaattatcaatatttactgacaaccagacatc 10798767  T
Q  210 caaaacagacggatcccacaccgtaataatacc 242  Q
    ||| ||||| |||||||||||||| ||||||||    
T  10798766 caacacagaaggatcccacaccgtgataatacc 10798734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 5388810 - 5388578
Alignment:
Q  10 acatcattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  5388810 acatcattaaaatcaccaagaacacaccaagccgcttctccatgtaatggaaacaaattagacaaagaatcccacaacacctgatgccccctactgtcac 5388711  T
Q  110 aaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatc 209  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  5388710 aaggagcataaacattcgccaaacagaacacctcattatttgcaacaaaagaacctttaacaatcaaacaattatcaatattaactgacaaccagacatc 5388611  T
Q  210 caaaacagacggatcccacaccgtaataatacc 242  Q
    ||| ||||| |||||||||| ||||||||||||    
T  5388610 caacacagaaggatcccacatcgtaataatacc 5388578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 2897316 - 2897373
Alignment:
Q  185 caatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacc 242  Q
    |||||||||| | |||||||||||||||||||   ||||||||||| |||||||||||    
T  2897316 caatatttaccgtcaaccaaacatccaaaacactaggatcccacacagtaataatacc 2897373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 221998 - 221770
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    |||||||||||||||||||||||||  | ||||| ||||||||  ||| |||||||| ||||| | ||||||| ||||| || || |||||||| |||||    
T  221998 cattaaaatcaccaagaacacaccacacagcttccccatgtaactgaatcaaattagtcaaagcaccccacaaaacctggcgaccactactatcgcaagg 221899  T
Q  114 agcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaa 213  Q
    |||||||||||| |||||||| ||||| |||||| ||  ||  ||    ||||| ||||| ||||||| | ||||||||||||| ||||| |||||||      
T  221898 agcataaatatttgccaaacaaaacacttcattactttttatgaacttccctttcacaataaaacaattagcaatatttactgataaccagacatccacc 221799  T
Q  214 acagacggatcccacaccgtaataatacc 242  Q
    |||   ||||||||||| || ||||||||    
T  221798 acactaggatcccacacagtgataatacc 221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 50262 - 50126
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    ||||||| || ||||| ||| |||||||| | || || |||||  | | ||||||||| | ||  |||||||  ||||||||||||||| ||||||||||    
T  50262 cattaaagtcgccaagcacaaaccaagccacatcaccgtgtaatagtagcaaattagagacagcgtcccacagaacctgtcgccccctattatcacaagg 50163  T
Q  114 agcataaatattcgccaaacagaacacctcattattt 150  Q
    |||||||||||| |||||||| ||||| |||||||||    
T  50162 agcataaatatttgccaaacaaaacacttcattattt 50126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 17824063 - 17823927
Alignment:
Q  14 cattaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagg 113  Q
    ||||||| |||||||| |||||||||||  | || || ||||   ||||||||||||| |  | ||||||||| ||||| || |||||| ||| ||||||    
T  17824063 cattaaagtcaccaagcacacaccaagctacatcaccgtgtaccagaaacaaattagagaccgcatcccacaaaacctgacgtcccctattattacaagg 17823964  T
Q  114 agcataaatattcgccaaacagaacacctcattattt 150  Q
    |||||||||||| |||||||| ||||  |||||||||    
T  17823963 agcataaatatttgccaaacaaaacatttcattattt 17823927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 15646353 - 15646312
Alignment:
Q  109 caaggagcataaatattcgccaaacagaacacctcattattt 150  Q
    ||||||||||||||||| |||||||| ||||| |||||||||    
T  15646353 caaggagcataaatatttgccaaacaaaacacttcattattt 15646312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 17151045 - 17150864
Alignment:
Q  61 aacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaagg 160  Q
    ||||||||||| | ||  ||||||||   ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||| |||||||||   | |||      
T  17151045 aacaaattagagacagcttcccacaaactctgacgccccctaatattgcaaggagcataaatatttaccaaacaaaacacttcattatttttaataaaca 17150946  T
Q  161 aacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacc 242  Q
    | || || |  ||||||||||   |||| ||||| | ||||||||||||||| |||   |||||||||||||||||||||||    
T  17150945 accccttgatcatcaaacaatttgcaatgtttaccgtcaaccaaacatccaacacattaggatcccacaccgtaataatacc 17150864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 3517690 - 3517850
Alignment:
Q  79 tcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaac 178  Q
    |||||||| | ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||  |||| ||||   | ||| || || || |  |||||||    
T  3517690 tcccacaaaatctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcatgatttttaataaacgaccccttgattatcaaac 3517789  T
Q  179 aataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataat 239  Q
    |||   |||||||||| | ||||||||||||||| |||   ||||||||||||||||||||    
T  3517790 aatttgcaatatttaccgtcaaccaaacatccaacacactaggatcccacaccgtaataat 3517850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 23824553 - 23824643
Alignment:
Q  59 gaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatt 149  Q
    ||||||||||||| |  | ||||||||| ||||| || || ||| ||| |||||||||||| ||||| |||||||| ||||| ||||||||    
T  23824553 gaaacaaattagagaccgcatcccacaagacctgacgtcctctattattacaaggagcatatatatttgccaaacaaaacacttcattatt 23824643  T

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