View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_95 (Length: 240)
Name: NF10129_low_95
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 29828170 - 29828345
Alignment:
| Q |
47 |
gcagaggtttgtacatttgaaaaagttaaatttagacaactctgaatgtctaacacagatattggacgtatctggtctcaaaaatttagtggaattttca |
146 |
Q |
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| T |
29828170 |
gcagaggtttgtacatttgaaaaagttaaatttagacaactctgaatgtctaacacagatattggacgtatctggtctcaaaaatttagtggaattttca |
29828269 |
T |
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| Q |
147 |
tttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaatattggatgctt |
222 |
Q |
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| T |
29828270 |
tttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaatattggatgctt |
29828345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 28096377 - 28096277
Alignment:
| Q |
111 |
gacgtatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaa |
210 |
Q |
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| T |
28096377 |
gacgtatctggtctccaaaatttagaagaattttcatttcaaaggtgtaagaaattacgtacaattcatgattctattgggttcctgaataaacttaaaa |
28096278 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
28096277 |
t |
28096277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 26341385 - 26341289
Alignment:
| Q |
115 |
tatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaat |
211 |
Q |
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| T |
26341385 |
tatctagtctccaaaatttagaagaattttcatttggaaggtgtaagaatgtactcgcaattcatgattctattgggttcttgaataaacttaaaat |
26341289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 28151493 - 28151589
Alignment:
| Q |
115 |
tatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattggattccttaataagctgaaaat |
211 |
Q |
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| T |
28151493 |
tatctggtctccaaaatttgaaggaattttcatttgaaagatgtaataatctacttacgattcatgattctattgggttcctgaataagcttaaaat |
28151589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 3281955 - 3282031
Alignment:
| Q |
114 |
gtatctggtctcaaaaatttagtggaattttcatttcgaaaatgtgagaatttagtcacaattcatgattctattgg |
190 |
Q |
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| T |
3281955 |
gtatctagtctccaaaatttagaagaattttcatttagatggtgtaggaatttactcacaattcatgattctgttgg |
3282031 |
T |
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