View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_97 (Length: 240)
Name: NF10129_low_97
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3219272 - 3219494
Alignment:
| Q |
1 |
taaaaacattcactttgtcaacttcatacaatatgatccaaatacacagtatctacctacccagaaataaatataaagtatatagtataataaagtatgt |
100 |
Q |
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| T |
3219272 |
taaaaacattcactttgtcaacttcatacaatatgatccaaatacacagtatctacctacccagaaataaatataaagtatatagtataataaagtatgt |
3219371 |
T |
|
| Q |
101 |
ataacaattaagagtgggacaatcacctcgatggacgaaagaaaatctacatccttttccttattgcattcagtctcttcaattttctatatccaaacca |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219372 |
ataacaattaagagtgggacaatcacctctatggacgaaagaaaatctacatctttttccttattgcattcagtctcttcaattttctatatccaaacca |
3219471 |
T |
|
| Q |
201 |
aactaatgttagcttatataagc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3219472 |
aactaatgttagcttatataagc |
3219494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 15986407 - 15986194
Alignment:
| Q |
3 |
aaaacattcactttgtcaacttcatacaatatgatccaaatacacagtatctacctacccagaaataaatataaagtatatagtataataaagtatgtat |
102 |
Q |
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||||||| |||| |||||||||| ||| ||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
15986407 |
aaaacatacactctgtcaacttcgtacgatatgatccaaatacacagcatctgcctatccagatataaatataaagtatatagtataat-------gtat |
15986315 |
T |
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| Q |
103 |
aacaattaagagtgggacaatcacctcgatggacgaaagaaaatctacatccttttccttattgcattcagtctcttcaattttctatatccaaaccaaa |
202 |
Q |
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||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15986314 |
aacaattaagagtagggcaatcacctctatggacgaaagaaaatctacatctttttccttattgatttcagtctcttcaattttctatatccaaaccaaa |
15986215 |
T |
|
| Q |
203 |
ctaatgttagcttatataagc |
223 |
Q |
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|| ||||||||||||| |||| |
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| T |
15986214 |
ctgatgttagcttatacaagc |
15986194 |
T |
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