View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10129_low_99 (Length: 240)
Name: NF10129_low_99
Description: NF10129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10129_low_99 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 24930247 - 24930465
Alignment:
| Q |
6 |
tggtgaatgataatgataggggagaggttttgactagttgcgagtgtctgtcttgtcaccggctgttctgtgcacagtgtaaggttccatggcatgcgga |
105 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930247 |
tggtgaatgataatgataagggagatgttttgactagttgcgagtgtccgtcttgtcatcggctgttctgtgcacagtgtaaggttccatggcatgcgga |
24930346 |
T |
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| Q |
106 |
gatgaattgtcaggagtttcaagatttgaaacgcgataaaaatgaaatagatttggatgataagtttttggagttagctaaaataaataaatggaagaga |
205 |
Q |
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| T |
24930347 |
gatgaattgtcaggagtttcaagatttgaaacgcgataaaaatgaaatagatttggatgataagtttttggagttagctaaaataaataaatggaagaga |
24930446 |
T |
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| Q |
206 |
tgtccaaattgctctatct |
224 |
Q |
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||||||||||||||||||| |
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| T |
24930447 |
tgtccaaattgctctatct |
24930465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 24976631 - 24976412
Alignment:
| Q |
5 |
ttggtgaatgataatgataggggagaggttttgactagttgcgagtgtctgtcttgtcaccggctgttctgtgcacagtgtaaggttccatggcatgcgg |
104 |
Q |
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| T |
24976631 |
ttggttaatgataataataggggtgtggttttgactagttgcgagtgtccatcttgtcaccgactattttgtgcacaatgtaaggttccatggcatgcgg |
24976532 |
T |
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| Q |
105 |
agatgaattgtcaggagtttcaagatttgaaacgcgataaaaatgaaatagatttggatgataagtttttggagttagctaaaataaataaatggaagag |
204 |
Q |
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| T |
24976531 |
agatgaattgtcaggagtttcaagatttgaaacgtcctaaaaaggaacaagatttggatgataaatttttggagttggctaacagaaagaagtggcagag |
24976432 |
T |
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| Q |
205 |
atgtccaaattgctctatct |
224 |
Q |
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| T |
24976431 |
atgcccaaattgctctatct |
24976412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 25027372 - 25027442
Alignment:
| Q |
56 |
tcttgtcaccggctgttctgtgcacagtgtaaggttccatggcatgcggagatgaattgtcaggagtttca |
126 |
Q |
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| T |
25027372 |
tcttgtcataggctgttttgtgcacaatgtaaagttccgtggcatacaaatatgaattgtcaggagtttca |
25027442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 1685 - 1467
Alignment:
| Q |
6 |
tggtgaatgataatgataggggagaggttttgactagttgcgagtgtctgtcttgtcaccggctgttctgtgcacagtgtaaggttccatggcatgcgga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
1685 |
tggtgaatgataatgataggggagaggttttgactagttgcgagtgtccgtcttgtcaccggctattctatgcacaatgtaaggttccatggcatgcgga |
1586 |
T |
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| Q |
106 |
gatgaattgtcaggagtttcaagatttgaaacgcgataaaaatgaaatagatttggatgataagtttttggagttagctaaaataaataaatggaagaga |
205 |
Q |
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|||||| |||||||| |||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| |||||||||||| ||| || ||| ||||| |
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| T |
1585 |
gatgaactgtcaggaatttcaagatttgaaacacaatacaaatgaagtagatttggatgataagtttttgaagttagctaaaagaaacaagtggcagaga |
1486 |
T |
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| Q |
206 |
tgtccaaattgctctatct |
224 |
Q |
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||||||||||||||||||| |
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| T |
1485 |
tgtccaaattgctctatct |
1467 |
T |
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