View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1012_low_2 (Length: 357)
Name: NF1012_low_2
Description: NF1012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1012_low_2 |
 | |
|
| [»] scaffold0184 (2 HSPs) |
| |
|
| [»] scaffold0078 (4 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0184 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 357
Target Start/End: Original strand, 15361 - 15689
Alignment:
| Q |
29 |
aagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgaga |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
15361 |
aagctgcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgaga |
15460 |
T |
|
| Q |
129 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15461 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattg |
15560 |
T |
|
| Q |
229 |
ttacttgaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattcta |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15561 |
ttacttgaccctatttgtgtaatgggtccgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaattcta |
15660 |
T |
|
| Q |
329 |
agaagctattaaacaagattccatcaacc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15661 |
agaagctattaaacaagattccatcaacc |
15689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 11861 - 11987
Alignment:
| Q |
77 |
tttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtgg |
176 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
11861 |
tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaattagtact |
11960 |
T |
|
| Q |
177 |
ttggtttttcaaccatttcaaacattc |
203 |
Q |
| |
|
||| ||||||||||| ||||||||||| |
|
|
| T |
11961 |
ttgatttttcaaccacttcaaacattc |
11987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 357
Target Start/End: Complemental strand, 57483 - 57155
Alignment:
| Q |
29 |
aagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgaga |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
57483 |
aagctgcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgaga |
57384 |
T |
|
| Q |
129 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
57383 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattg |
57284 |
T |
|
| Q |
229 |
ttacttgaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattcta |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
57283 |
ttacttgaccctatttgtgtaatgggtccgacgggaaaaaacccgatttttccataacccttttgttccaatgcttttgtagcacttgattctaattcta |
57184 |
T |
|
| Q |
329 |
agaagctattaaacaagattccatcaacc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
57183 |
agaagctattaaacaagattccatcaacc |
57155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 2940 - 2613
Alignment:
| Q |
29 |
aagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgaga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
|
|
| T |
2940 |
aagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtga |
2841 |
T |
|
| Q |
129 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2840 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcaccaacaacatcattg |
2741 |
T |
|
| Q |
229 |
ttacttgaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattcta |
328 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||| ||| | | |
|
|
| T |
2740 |
ttacttgaccctatttgtgtaataggtccgacgggaaaaaacccgatttttccatcacccttttgctccaatgcttttatagcacttgattccaatgcaa |
2641 |
T |
|
| Q |
329 |
agaagctattaaacaagattccatcaac |
356 |
Q |
| |
|
|||| || |||||||||||||||||||| |
|
|
| T |
2640 |
agaaactgttaaacaagattccatcaac |
2613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 22194 - 21870
Alignment:
| Q |
29 |
aagcagcactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgaga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
22194 |
aagcagcactaactgaatcacttggtgctctcaatacccaaatgaatctttgaccactcaattccaaaccaaaagctagctcattgatttgtgtttgaga |
22095 |
T |
|
| Q |
129 |
aagtgttccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22094 |
aagtgttccaccacttccaaaagaaacatacaaaactgaattttgtggttggtttttcaaccatttcaaacattcaagttcatcac---caacatcattg |
21998 |
T |
|
| Q |
229 |
ttacttgaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattcta |
328 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||| | ||||||||||||| ||||| | |
|
|
| T |
21997 |
ttacttaaccctgtttgtgtaatgggtccaacaggaaaaaaatcaatttttccataaccctttagttccaatgcttttatagcacttgattccaattcaa |
21898 |
T |
|
| Q |
329 |
agaagctattaaacaagattccatcaac |
356 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
21897 |
tgaagctattgatcaagattccatcaac |
21870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 203
Target Start/End: Complemental strand, 60983 - 60857
Alignment:
| Q |
77 |
tttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaacagaattttgtgg |
176 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
60983 |
tttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaattagtact |
60884 |
T |
|
| Q |
177 |
ttggtttttcaaccatttcaaacattc |
203 |
Q |
| |
|
||| ||||||||||| ||||||||||| |
|
|
| T |
60883 |
ttgatttttcaaccacttcaaacattc |
60857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 356
Target Start/End: Complemental strand, 16566590 - 16566269
Alignment:
| Q |
35 |
cactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
16566590 |
cactaactgaatcacttggttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgt |
16566491 |
T |
|
| Q |
135 |
tccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattgttactt |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
16566490 |
tccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatcattgttactt |
16566391 |
T |
|
| Q |
235 |
gaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattctaagaagc |
334 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||| ||||| |||| | ||||||||||||| ||| | ||||| | |
|
|
| T |
16566390 |
gaccctatttgtgtaatgggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaatgcaaagaaac |
16566291 |
T |
|
| Q |
335 |
tattaaacaagattccatcaac |
356 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
16566290 |
tgttaaacaagattccatcaac |
16566269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 35 - 356
Target Start/End: Original strand, 16599072 - 16599393
Alignment:
| Q |
35 |
cactaactgaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgt |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
16599072 |
cactaactgaatcacttggttgtctcacaacccaaatgaatctttggctactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgt |
16599171 |
T |
|
| Q |
135 |
tccaccacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcatgttcatcactaacaacatcattgttactt |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
16599172 |
tccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaacattcaagttcatcgccaacaacatcattgttactt |
16599271 |
T |
|
| Q |
235 |
gaccctatttgtgtaatgggtcccacaggaaaaaacccgatttttccataacccttttgttccaatgcttgtgtagcacttgattctaattctaagaagc |
334 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||||| ||||| |||| | ||||||||||||| ||| | ||||| | |
|
|
| T |
16599272 |
gaccctatttgtgtaatgggtccgaccggaaaaaacccgatttttccatcaccattttgctccaaagcttttatagcacttgattccaatgcaaagaaac |
16599371 |
T |
|
| Q |
335 |
tattaaacaagattccatcaac |
356 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
16599372 |
tgttaaacaagattccatcaac |
16599393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 16490778 - 16490658
Alignment:
| Q |
47 |
cacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcc |
146 |
Q |
| |
|
||||||||| ||| | || ||||| ||| ||| |||||||||||| || ||| |||||| ||||| | ||| ||| |||||||||||||||||||| |
|
|
| T |
16490778 |
cacttggtgatcttaaaatccaaagaaattttttaccactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttcc |
16490679 |
T |
|
| Q |
147 |
aaaagaaacatacaaaacaga |
167 |
Q |
| |
|
|||||| ||| |||||||||| |
|
|
| T |
16490678 |
aaaagacacaaacaaaacaga |
16490658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 2018426 - 2018542
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||||| ||| |||||||| | |||| | ||| ||||||||||||||| ||||| || ||||| |||||| ||| |||||||| |||||||| ||| |
|
|
| T |
2018426 |
acttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactccca |
2018525 |
T |
|
| Q |
148 |
aaagaaacatacaaaac |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2018526 |
aaagaaacatacaaaac |
2018542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 1963386 - 1963270
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||| ||||| |||||||| | |||| | ||| ||||||||||||||| ||||| | |||| |||||| ||| |||||||| |||||||| ||| |
|
|
| T |
1963386 |
acttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacca |
1963287 |
T |
|
| Q |
148 |
aaagaaacatacaaaac |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1963286 |
aaagaaacatacaaaac |
1963270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 2015043 - 2015155
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||||| ||| |||||||| | |||| | ||| ||||||||||||||| ||||| || ||||| |||||| ||| ||||||||||||||||| || |
|
|
| T |
2015043 |
acttggtgatcttacaacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccg |
2015142 |
T |
|
| Q |
148 |
aaagaaacataca |
160 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2015143 |
aaagacacataca |
2015155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 3707790 - 3707646
Alignment:
| Q |
56 |
ctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttccaaaagaaac |
155 |
Q |
| |
|
|||||| |||||| | |||| | |||||||||||||||| || ||||||||||||||| ||||| |||||| | ||||| ||||||||||| | || |
|
|
| T |
3707790 |
ctctcaaaacccacaagaatttctgaccactcaattccagccccaaagctagttcattggtttgttgttgagataaagttcctccacttccaaagcacac |
3707691 |
T |
|
| Q |
156 |
atacaaaacagaattttgtggttggtttttcaaccatttcaaaca |
200 |
Q |
| |
|
||||||||| || ||| ||| ||| || | |||||| |||||||| |
|
|
| T |
3707690 |
atacaaaactgagtttggtgtttgattctccaaccacttcaaaca |
3707646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 3770405 - 3770549
Alignment:
| Q |
56 |
ctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttccaaaagaaac |
155 |
Q |
| |
|
|||||| |||||| | |||| | ||||||||||| |||| || ||||||||||||||| ||||| |||||||| ||||| ||||||||||| | || |
|
|
| T |
3770405 |
ctctcaaaacccacaagaatttctgaccactcaactccagccccaaagctagttcattggtttgttgttgagaaaaagttcctccacttccaaagcagac |
3770504 |
T |
|
| Q |
156 |
atacaaaacagaattttgtggttggtttttcaaccatttcaaaca |
200 |
Q |
| |
|
||||||||| || ||| ||| ||| || | |||||| |||||||| |
|
|
| T |
3770505 |
atacaaaactgagtttggtgtttgattctccaaccacttcaaaca |
3770549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 3701036 - 3700879
Alignment:
| Q |
43 |
gaatcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccac |
142 |
Q |
| |
|
|||| ||| ||| |||||| |||||| | |||| | ||| |||||| ||||| || ||||||||||||||||||||| |||||| | ||||| |||| |
|
|
| T |
3701036 |
gaattactaggttctctcaaaacccacaagaatttctgattactcaactccaaccccaaagctagttcattgatttgttgttgagataaagttcctccac |
3700937 |
T |
|
| Q |
143 |
ttccaaaagaaacatacaaaacagaattttgtggttggtttttcaaccatttcaaaca |
200 |
Q |
| |
|
||||||| | ||||||||||| || ||| ||| ||| || | |||||| |||||||| |
|
|
| T |
3700936 |
ttccaaagcagacatacaaaactgagtttggtgtttgattctccaaccacttcaaaca |
3700879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 563947 - 564058
Alignment:
| Q |
45 |
atcacttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccactt |
144 |
Q |
| |
|
|||| ||||| ||||||||||||||| || |||||| ||||||||| || || || |||| ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
563947 |
atcatttggttctctcacaacccaaagaaacttttgactactcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccacta |
564046 |
T |
|
| Q |
145 |
ccaaaagaaaca |
156 |
Q |
| |
|
||||| |||||| |
|
|
| T |
564047 |
ccaaatgaaaca |
564058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 2011644 - 2011760
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
||||||||||| ||||||||| | |||| | ||| ||||||||||||||| ||||| || ||| |||||| || |||||||| |||||||| || |
|
|
| T |
2011644 |
acttggtgctcgcacaacccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccg |
2011743 |
T |
|
| Q |
148 |
aaagaaacatacaaaac |
164 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
2011744 |
aaagacacatacaaaac |
2011760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 2004685 - 2004765
Alignment:
| Q |
84 |
actcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttccaaaagaaacatacaaaac |
164 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||||| ||| |||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
2004685 |
actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac |
2004765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 8294629 - 8294772
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||| |||||||||||||| | |||| | |||||||||||||| | ||||||||||| || |||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8294629 |
acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca |
8294728 |
T |
|
| Q |
148 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
191 |
Q |
| |
|
||||| ||| | | ||||||| || || |||| |||| |||||| |
|
|
| T |
8294729 |
aaagagacaaaaagaacagaacttggttgttgattttccaacca |
8294772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 33257126 - 33256983
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||| |||||||||||||| | ||| | |||||||||||||| | ||||||||||| ||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
33257126 |
acttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcca |
33257027 |
T |
|
| Q |
148 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
191 |
Q |
| |
|
|| || ||| | | ||||||| || |||| || |||| |||||| |
|
|
| T |
33257026 |
aaggagacaaaaataacagaacttggtggctgattttccaacca |
33256983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 845290 - 845329
Alignment:
| Q |
128 |
aaagtgttccaccacttccaaaagaaacatacaaaacaga |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
845290 |
aaagtgttccaccacttccaaatgaaacatacaaaacaga |
845329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 875740 - 875779
Alignment:
| Q |
128 |
aaagtgttccaccacttccaaaagaaacatacaaaacaga |
167 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
875740 |
aaagtgttccacaacttccaaatgaaacatacaaaacaga |
875779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 5902559 - 5902443
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| ||| | |||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
5902559 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttcca |
5902460 |
T |
|
| Q |
148 |
aaagaaacatacaaaac |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5902459 |
aaagaaacatacaaaac |
5902443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 5906043 - 5905927
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| ||||| ||| ||||||| ||||| |||||| |
|
|
| T |
5906043 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttcca |
5905944 |
T |
|
| Q |
148 |
aaagaaacatacaaaac |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5905943 |
aaagaaacatacaaaac |
5905927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 1244 - 1101
Alignment:
| Q |
48 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattgatttgtctttgagaaagtgttccaccacttcca |
147 |
Q |
| |
|
|||||| |||||||||||||| | ||| | |||||||||||||| | ||||||||||| ||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
1244 |
acttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttcca |
1145 |
T |
|
| Q |
148 |
aaagaaacatacaaaacagaattttgtggttggtttttcaacca |
191 |
Q |
| |
|
|| || ||| | | ||||||| || |||| || |||| |||||| |
|
|
| T |
1144 |
aaggagacaaaaataacagaacttggtggctgattttccaacca |
1101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University