View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1012_low_8 (Length: 253)
Name: NF1012_low_8
Description: NF1012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1012_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 17139931 - 17140171
Alignment:
| Q |
12 |
tatagtactattagtaagatgggatcaattgttgacatgagatgcattgagacttgaagtggcggcgtaattttttcaaatgataaaaaccatatttcaa |
111 |
Q |
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| T |
17139931 |
tatagtactattagtaagatgggatcaattgttgacatgagatgcattgagacttgaagtggcggcgtaattttttcaaatgagaaaaaccatatttcaa |
17140030 |
T |
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| Q |
112 |
catttttaggatttcttnnnnnnnnngaaaacatttttaggataaaatttgagaaggtattgaaattaatggtgttgacaactggacttggactcttgaa |
211 |
Q |
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| T |
17140031 |
catttttaggatttctt-aaaaaaaagaaaacatttttaggataaaatttgagaaggtattgaaattaatggtgttgacaattggactttgactcttgaa |
17140129 |
T |
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| Q |
212 |
aagtcggatattttctctgtcaagtctcttttttctgtgctt |
253 |
Q |
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| T |
17140130 |
aagtccgatattttctttgtcaagtctcttttttctgtgctt |
17140171 |
T |
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